Rothia kristinae: I6G21_06995
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Entry
I6G21_06995 CDS
T06977
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rkr
Rothia kristinae
Pathway
rkr03030
DNA replication
rkr03410
Base excision repair
rkr03420
Nucleotide excision repair
rkr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6G21_06995 (ligA)
03410 Base excision repair
I6G21_06995 (ligA)
03420 Nucleotide excision repair
I6G21_06995 (ligA)
03430 Mismatch repair
I6G21_06995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkr03032
]
I6G21_06995 (ligA)
03400 DNA repair and recombination proteins [BR:
rkr03400
]
I6G21_06995 (ligA)
Enzymes [BR:
rkr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6G21_06995 (ligA)
DNA replication proteins [BR:
rkr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6G21_06995 (ligA)
DNA repair and recombination proteins [BR:
rkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6G21_06995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6G21_06995 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6G21_06995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6G21_06995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QPT53050
UniProt:
A0A199NVV4
LinkDB
All DBs
Position
1590747..1593014
Genome browser
AA seq
755 aa
AA seq
DB search
MSTEKTRAQHATADADREIPEERLKDRYAELIEQVRAARTAYYLEDAPRISDASYDALYR
ELETLEAEHPELVANDSPTQEVGGEVSEAFAPVRHLERMYSLEDVFSVEELRAWLARARE
SIERLRPGARPAWLTELKIDGLAVNLLYREGRLVRAATRGDGTTGEDVTRNVATIASIPQ
RLTGEDVPAEIEVRGEIFIASADFRELNEALVAAGKAPFANPRNAAAGSLRQKDPEVTAR
RRLSVFIHGIGHRTELSADSQSQAYELLASWGLPVSPYARVLETEEQILEFIADYGQHRH
DLVHEIDGIVVKVDDFRTQALLGHTSRVPRWAVAFKYPPEEVNTRLLDIEVSVGRTGRAT
PYGLMEPVKVAGSTVSMATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEIVGPVAALRDGT
EREFRMPETCPSCGTRLAPAKEGDVDLRCPNHRSCPAQLWQTLAYIGSRSVLDIDALGEE
TAQALTQPAEPAEPPLVSMAGLFELRPEDLEPVQTWRDTFLTDEAGKRVRGADGRFQRTG
EQELVPYFYGRIPVDAPARVKGLRRDQPQKHTETLFQELAKAKTQPLWRVLVALSIRHVG
PNAARALATRFGSMDAIRAADREALAETDGVGPVIADAVIDWFAEEWHREIVDRWAAAGV
RMEDERDETVPRVLEGVTVVVTGTVEGYTRDSAKEAIIRRGGKSTGSVSKKTDFLVAGEN
AGSKLEKAEQLGVKILDAEGFAVLLREGPAPFDAA
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgagaagacccgcgcccagcacgccaccgccgacgccgaccgcgagatcccc
gaggagcggctgaaggaccgctacgccgagctgatcgagcaggtccgcgccgcgcgcacc
gcctactacctggaggacgccccgaggatctccgacgcctcctacgatgcgctgtaccgc
gagctggagacgctggaggccgagcatccggagctggtcgccaacgactccccgacccag
gaggtcggcggggaggtctccgaggccttcgccccggtgcggcacctggagaggatgtac
tccctggaggacgtgttctccgtcgaggagctgcgcgcctggctggcccgggcccgggag
tccatcgagcggctgcgacccggggcgcgcccggcctggctcaccgagctgaagatcgac
ggactggcggtgaacctgctgtaccgggaggggcgcctggtgcgcgccgcgacccgcggg
gacgggaccacgggggaggacgtgacccgcaacgtcgcgaccatcgcctccatcccccag
cggctcaccggtgaggacgtacccgcggagatcgaggtgcgcggggagatcttcatcgcc
tcggccgatttccgggagctgaacgaggccctggtcgcggccggcaaggcgcccttcgcc
aacccgcgcaacgccgcggccgggtccctgcggcagaaggatccggaggtcaccgcgcgg
cgtcggctgtccgtgttcatccacggcatcgggcaccgcacggagctgtccgcggactcc
cagtcgcaggcctacgagctgctggcctcctgggggctgccggtgagcccctatgcccgg
gtgctggagaccgaggagcagatcctggagttcatcgccgactacgggcagcaccggcac
gatctggtgcacgagatcgacggcatcgtcgtcaaggtggatgacttccgcacccaggcc
ctgctggggcacacctcccgggtgccgcgctgggccgtggccttcaagtacccgccggag
gaggtcaacacccggctgctggacatcgaggtcagcgtcgggcgcaccggacgggccacc
ccgtacgggctgatggagccggtgaaggtggcaggctccaccgtgtccatggccaccctg
cacaaccaggacgtggtgaaggccaagggggtgctgatcggggacaccgtggtgctgcgc
aaggccggggacgtgatcccggagatcgtggggcccgtggcggccctgcgcgacggcacc
gaacgggagttccggatgcccgagacctgcccctcctgcgggacgcggctggccccggcc
aaggagggggatgtggacctgcgctgccccaaccaccgctcctgcccggcccagctgtgg
cagaccctggcctacatcggctcccgctcggtgctggacatcgacgccctgggggaggag
acggcccaggcgctgacccagccggccgagcccgccgaaccgccgctggtgtccatggcg
gggctgttcgagctgagacccgaggatctggagccggtgcagacctggcgggacaccttc
ctcaccgacgaggcgggcaagcgggtgcgcggggccgacggccggttccagcgcaccggc
gagcaggagctggtgccctacttctacgggcgcatcccggtggacgcccccgcgcgggtc
aaggggctgcggcgggatcagccccagaagcacaccgaaaccctgttccaggagctggcc
aaggccaagacccagccgctgtggcgggtgctggtggccctgtccatccgccacgtgggt
cccaacgccgcacgggccctggccacccgcttcggctcgatggacgcgatccgcgcggcc
gatcgcgaggccctggccgagacggacggggtgggcccggtgatcgccgacgccgtgatc
gactggttcgccgaggagtggcaccgggagatcgtggaccggtgggccgcggccggggtg
cggatggaggacgagcgggacgagaccgtgccgagggtgctggagggggtcacggtcgtg
gtcaccggcaccgtcgagggctacacccgggactccgcgaaggaggcgatcatccggcgc
ggcgggaagtccaccggctccgtgtccaagaagacggacttcctcgtggcgggggagaac
gccggctccaagctggagaaggccgagcagctgggtgtgaagatcctggatgcggagggc
ttcgcggtgctgctgcgggagggcccggcccccttcgatgccgcgtga
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