Candidatus Rickettsia kotlanii: FLA4_01670
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Entry
FLA4_01670 CDS
T09157
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rkt
Candidatus Rickettsia kotlanii
Pathway
rkt03030
DNA replication
rkt03410
Base excision repair
rkt03420
Nucleotide excision repair
rkt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rkt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FLA4_01670 (ligA)
03410 Base excision repair
FLA4_01670 (ligA)
03420 Nucleotide excision repair
FLA4_01670 (ligA)
03430 Mismatch repair
FLA4_01670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkt03032
]
FLA4_01670 (ligA)
03400 DNA repair and recombination proteins [BR:
rkt03400
]
FLA4_01670 (ligA)
Enzymes [BR:
rkt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FLA4_01670 (ligA)
DNA replication proteins [BR:
rkt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FLA4_01670 (ligA)
DNA repair and recombination proteins [BR:
rkt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FLA4_01670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FLA4_01670 (ligA)
MMR (mismatch excision repair)
DNA ligase
FLA4_01670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FLA4_01670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
TLN1-like_RS
Motif
Other DBs
NCBI-ProteinID:
BDU59757
LinkDB
All DBs
Position
complement(153408..155477)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEEEAQKLLKELADKIAAYNHAYYIEDNPLVPDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKITNKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPIFC
EPKIDGLSFSAVYKNGVLTTGATRGDGRVGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQKEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRGNLPYEIDGVVYKLNDFA
LQNRMGFIARSARFATAHKFPAIIGHTKLLAITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTASFDTPLFCLSCNSKL
HYVPGDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIKGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLRTNESDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTNKIVVFTGSLLTISRAEAKATAEKLGAKVTVGISSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaagaggaagcacaaaaattactaaaagaactcgct
gataaaatagcagcgtataaccatgcttattatatagaagataatcctttagttcctgat
agtgagtatgatcaactatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaataacaaataaatttgctaaa
gttacgcatcaagtgcctatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgtataaaaaatttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaaaacggggtgcttacaacg
ggagctacaagaggtgacggacgtgttggtgaagatataacagcaaatattaaaacaatt
aaaaattttcctcataaaatagataatgttccagagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaaaaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgatgcttctatt
acagctaaaagaccactcaaatattttgtatattcaggaggagtaactgaacagaatctc
gcgtcttcacaagatcaattacttacaaaattaaaggaatgcggctttaacattaatgaa
atatctaaacttgcaagttctgaagaagaaattttcgccttttacgaatatctcaaaaca
aataggggaaatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtgcacgctttgctactgctcataaattt
cctgcaataataggacacacaaagttacttgctattactgtacaggtcggtagaactggt
acgttaacgccggtagccgaacttgaacccatagaaataggcggggtcaccgttagtaga
gcaacattacataatttccaagaaattgcacgaaaagatgtgcggattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatacagcatcgtttgatactcctttattttgtctgtcatgcaattctaagttg
cattatgtgcctggagatattattatacgctgtgataatggccttaactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattaaggggcttggg
cgtaagcaagttgagtttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaacaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaatttggcagctataataattttatagctcaaatggaattgcttagaacaaatgag
tctgatatttatcaaaaactaaacaatttagaaggaattggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacgaacaagatagtc
gtatttaccggtagtttactgacgatatctagagcagaagctaaagcaacggctgagaag
cttggggctaaagttacagttggcatatcctcgaacacggatttagttgtagccggtgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa
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