Rhizobium leguminosarum bv. trifolii WSM1689: RLEG3_24780
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Entry
RLEG3_24780 CDS
T03009
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rlb
Rhizobium leguminosarum bv. trifolii WSM1689
Pathway
rlb03030
DNA replication
rlb03410
Base excision repair
rlb03420
Nucleotide excision repair
rlb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RLEG3_24780
03410 Base excision repair
RLEG3_24780
03420 Nucleotide excision repair
RLEG3_24780
03430 Mismatch repair
RLEG3_24780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlb03032
]
RLEG3_24780
03400 DNA repair and recombination proteins [BR:
rlb03400
]
RLEG3_24780
Enzymes [BR:
rlb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RLEG3_24780
DNA replication proteins [BR:
rlb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RLEG3_24780
DNA repair and recombination proteins [BR:
rlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RLEG3_24780
NER (nucleotide excision repair)
GGR (global genome repair) factors
RLEG3_24780
MMR (mismatch excision repair)
DNA ligase
RLEG3_24780
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RLEG3_24780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
Lar_restr_allev
HHH
5_3_exonuc
RNA_ligase
DUF6851
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AHF84829
LinkDB
All DBs
Position
complement(2872225..2874381)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGFTVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVR
FPELIREDSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPEDTQFGMVQTFKDWGFPVNPLMKRLNSVADILSHYDEIGLERPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITV
GGVVVTNATLHNADYIRGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRP
AEARPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI
TERRSIALHRFIYALGIRHVGETTAKLLARSYGAYAAFEAAMREAEALSGDAWNDLNAIE
GIGEVVARAVVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggtttcaccgtcgacacgttgacgatcgaagaggctgccgccgagctt
gaacggctggcaaaggagattgcgcaccacgatgcgctctatcacggcaaggaccggccg
gagatttcggatgccgattacgacgcgctgaagcgccgcaacgatgcgctggaagtgcgg
tttcccgagttgatccgtgaagacagcccatcgcggcatgtcggtgcagcgccctccgtc
actttttcgcccgtcgttcatgcgcggccgatgctgtcgctcgacaacaccttctcgcag
gaggatgtgcaggatttcgtcgcgggcgtctatcgcttcctcggccggctgccggatcaa
tcgatcgcctttactgcagagccgaagatcgacggcctgtcgatgtctatccgttacgag
aacggcaggctggtgacggcagcgacgcgcggcgacggcacgacgggggagaatgtcacc
gccaatatccgcaccatcgccgagatccccaacgagctgccgaaaggtgttcctgctgtc
gtcgagatccgcggcgaggtctacatggccaagagcgacttcctggcgctgaaccggcag
atggaggcggagggcaagcagacctatgtcaatccgcgcaataccgccgccgggtcgctg
cgccagctcgacgccaaggtgacggcgagtcgcaagctgaaattcttcgcttatgcgtgg
ggcgagatgtcggaaatgcctgaagatacgcaatttgggatggtgcagactttcaaggac
tggggttttcccgtcaatccgctgatgaagcgattgaactcggtcgccgacatcctgtcg
cattatgacgagatcggcctcgagcgcccggatctcgattacgacatcgacggcgtcgtc
tataaggtcgacagcctcgaactgcaggcccgtctcggcttccgctcgcgctcgccgcgc
tgggcgacggcgcacaagtttcctgccgagcaggctttcacgatcgtcgagaatatcgac
attcaagtcggccgcaccggcgccctgacacccgtcgcgcggttgacgccgatcaccgtc
ggtggcgtggtcgtcaccaatgcgacgctgcacaacgcggattacatcaggggcatcggc
aatagcggcgagcgcatccgcgacgatgagcacgatattcgcatcggcgataccgtcatc
gtgcagcgcgccggtgatgtgatcccgcaggtgctcgacgtcgtcatggagaagcggccg
gccgaggccaggccatatgaatttccgaagacctgcccggtctgcggttcgcatgccgtg
cgtgaaagacatgagaagaccggcaagctcgattcggtcacccgctgcaccggcggcttc
atttgcagggcgcaggcgacggagcatctgaagcatttcgtttcgcgaaacgccttcgat
atcgaagggctcggttcgaagcagatcgatttcttcttcgaaaacgaggacgcgtcgctg
cagatccgcaccgcgcccgatatcttcacgctggagaagcgtcagcagcaatcgctgacc
aagctggagaatatcgacggcttcggcaaggtcagcgtcggcaagctctatgcggcgatc
accgaacggcgcagcattgcgctccaccgcttcatctacgcgctcggcatccgtcatgtc
ggcgagaccacggcgaagctcttggctcgctcctacggtgcctatgcggcctttgaagcc
gcaatgcgcgaggccgaggcgctttccggcgacgcctggaacgatctcaacgccatcgag
ggcatcggggaggtcgtggcgcgggctgtcgtcgaattctacaaggagccgcgcaatgtc
gaggtgatcacccgactgcttgaggaagtgacgcccgaggaggctgaacaaccgaagacg
gcaggcagcccggttgccggtaagaccgtggttttcaccggctcgctggaaaagtttacc
cgcgacgaggcaaaggcgagggcggaaagcctcggcgccaaggtggcgggatcggtctcg
aagaagaccgacatcgtcgtcgctggccccggtgccggctccaagctcgacaaggcgcgc
gaactcggcgtgcagacgatggacgaggacgaatggctggcacttatcagcgggtga
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