Rubripirellula lacrimiformis: K227x_30460
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Entry
K227x_30460 CDS
T07352
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rlc
Rubripirellula lacrimiformis
Pathway
rlc03030
DNA replication
rlc03410
Base excision repair
rlc03420
Nucleotide excision repair
rlc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K227x_30460 (ligA)
03410 Base excision repair
K227x_30460 (ligA)
03420 Nucleotide excision repair
K227x_30460 (ligA)
03430 Mismatch repair
K227x_30460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlc03032
]
K227x_30460 (ligA)
03400 DNA repair and recombination proteins [BR:
rlc03400
]
K227x_30460 (ligA)
Enzymes [BR:
rlc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K227x_30460 (ligA)
DNA replication proteins [BR:
rlc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K227x_30460 (ligA)
DNA repair and recombination proteins [BR:
rlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K227x_30460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K227x_30460 (ligA)
MMR (mismatch excision repair)
DNA ligase
K227x_30460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K227x_30460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
TF_Zn_Ribbon
HHH_8
zf-C4_Topoisom
HHH
Motif
Other DBs
NCBI-ProteinID:
QDT04653
UniProt:
A0A517NBZ2
LinkDB
All DBs
Position
complement(4034780..4036849)
Genome browser
AA seq
689 aa
AA seq
DB search
MAQPAAKRVQELRQEVRRLDHLYYVEAKPAVTDLEYDRLLQELKQLETAHPELRSADSPT
QRIGDAPVEHLVQVQHSVPMLSIDNTYSRQELQAYFDRTEKLLEGESIQWVMEYKIDGVA
ASVRYENGQMKLALTRGNGTVGDDITHNIRTVRDLPLSTRGETPPAVLEVRGEVYMTNAD
LADLNLRQAEAGDEPFKNTRNVTAGTIRLLDPAIAAQRKLRFFCHGVGQTEGLTSTTHID
FLEEIGHLGIPPTPDVQLLDGAAAAIEAVAILEDEMPDLPFEVDGIVFKVNDFAQREKLG
MRSKSPRWLIAYKFERYEATTTLNSITVQVGKTGTITPVAHLTPVDIADTTVSRASLHNA
DEIERLDVREGDTVIVEKAGKIIPKVVRVEKHMRQGELTKWTFPTKCPECSSELVRDEGG
VYIRCPNPQCPAQLRQRLIYFGSRTGMDIDGLGDEVVDLLLGHGLVHSYADLYRLTVDQV
AQLTWPRQRKGKDGAMIDVQFGQLNAEALIKGIAASRNRGLARVLSSISIRHVGPRVARV
ISHDYHTIEQLMDASSEDLAAIHEIGDAIAKSVTEFCHSTAGQTIFRELAAAGVQLSDPE
PEPIVGDNPIFGKTVVVTGTLKQFKRAEIKGLIEKLGGRASTSVSKKTDFLLAGEKAGSK
LAKAKELGVNVISESDLQAMLDQRESSDT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaccagctgcgaaacgcgtccaagaactgcgccaggaagttcgtcgtcttgac
catctgtactacgtcgaagccaagcctgcagtcacggatcttgaatacgaccgtttgctg
caggaactgaagcaactagaaaccgcgcatcccgaactacgatcggccgactcgccgacg
caacgaatcggcgatgctcccgtcgaacacttggtccaggtccagcacagcgtcccgatg
ttgtcgatcgacaacacctacagccgccaggaactgcaggcgtactttgaccgcaccgaa
aagttgctcgaaggcgaatccatccagtgggtgatggagtacaagatcgacggcgtcgcg
gcatcggtacgttacgaaaacggtcagatgaaattggccctgacacgcggcaacggcacg
gtgggcgacgacatcacgcacaacattcgtaccgtgcgcgacctaccactatcaactcgc
ggtgaaacccctcctgccgtgctggaagtgcgtggcgaagtctacatgaccaacgccgat
ctggcggatttgaaccttcgccaagccgaggcgggggacgaaccgttcaaaaacactcgc
aacgtcaccgcgggtacgatccggctgttggatccggccatcgcggcgcagcgaaagttg
cggtttttctgtcacggcgtcggtcaaaccgaagggctgacatccacaacacacatagat
ttcctagaagagattggacacctggggattccccccaccccagacgttcagttgctcgat
ggcgcagcggccgcaatcgaagcggtggcgatcctagaggacgagatgcctgacctgccc
ttcgaggtcgacgggatcgtgttcaaggtcaacgattttgcccagcgtgaaaagctgggc
atgcggagcaagagtcctcgctggctaatcgcctacaagttcgaacgatacgaagcgacg
acgacgctgaattcaatcacggtccaggtcggaaagaccggcaccatcactcccgttgct
cacctgacgccggtcgacatcgccgacacgacggtatcgcgggcatccctgcacaacgct
gatgaaatcgagcggctggacgtccgcgaaggcgacaccgtgatcgtcgaaaaagcgggc
aagatcattcccaaagtcgtccgcgtcgaaaagcacatgcggcaaggcgaactcaccaag
tggaccttcccaaccaagtgtcccgaatgcagcagtgaactggtgcgtgacgaaggcggc
gtctatatccgttgtcccaatccacagtgcccagcgcaattgcgtcagcgtctgatctat
ttcggcagccgtaccggcatggacatcgatggcctgggggacgaagtggtggacctgtta
ctggggcatggactggttcacagctatgccgacctgtatcggttgacggtcgatcaagtc
gcccaattgacctggcctcgccaacgaaagggcaaagacggcgccatgatcgatgtccaa
ttcggtcaactcaacgccgaagccctgatcaaggggatcgccgcaagccgcaatcgcggg
ctggctcgcgtcttgtcgtccatctcgattcgtcatgtcggaccgcgagttgcccgagtc
atttcgcacgactatcacaccatcgaacaattgatggacgcatcgtcggaagatttggcg
gcgatccacgaaatcggcgatgcgattgccaaaagcgtcaccgaattttgccactccacc
gccggccagaccatctttcgtgaactggcagcggccggtgtccagttgtccgaccccgag
cccgaaccaatcgtcggcgacaaccccatttttggaaaaacggtggttgtgaccggaacg
ctgaagcagttcaaacgcgcggagatcaaaggcctgatcgaaaagctgggcggacgagca
tcgaccagcgtcagcaaaaaaaccgacttcctgctggcgggcgagaaagcgggcagcaag
ctggccaaagccaaagaattaggcgtcaacgtgatcagcgaatctgaccttcaagcgatg
ttggaccagcgcgaatccagcgacacttag
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