Rhodoferax lithotrophicus: MIZ03_2493
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Entry
MIZ03_2493 CDS
T10289
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh03030
DNA replication
rlh03410
Base excision repair
rlh03420
Nucleotide excision repair
rlh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MIZ03_2493
03410 Base excision repair
MIZ03_2493
03420 Nucleotide excision repair
MIZ03_2493
03430 Mismatch repair
MIZ03_2493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlh03032
]
MIZ03_2493
03400 DNA repair and recombination proteins [BR:
rlh03400
]
MIZ03_2493
Enzymes [BR:
rlh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MIZ03_2493
DNA replication proteins [BR:
rlh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MIZ03_2493
DNA repair and recombination proteins [BR:
rlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MIZ03_2493
NER (nucleotide excision repair)
GGR (global genome repair) factors
MIZ03_2493
MMR (mismatch excision repair)
DNA ligase
MIZ03_2493
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MIZ03_2493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCO27604
LinkDB
All DBs
Position
complement(2525578..2527698)
Genome browser
AA seq
706 aa
AA seq
DB search
MFTPDMFAPEATNTADAQLITQLRETLHTHAHSYYVLDAPTVPDAEYDRLFRQLQDLEAR
HPELASPDSPTQRVGGKTLDQFAQVRHAVPMLSIKTETDTRASGAENFDARIRRELGLTE
VDPAIEYVAEPKFDGLAMNLRYEHGVLVQAATRGDGEVGEDVTQNIRTIGQIPLKLPAGV
PEVLEVRGEVYMRRDDFEALNERQRLRIAAGERGEKTFVNPRNAAAGAVRQLDPAIAAQR
PLSFFAYGLGEISPTGQGAAQWSTHYALLQTLKSWGFPVCALVKQAQGAIELIAFYETIG
QQRDGLGYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKFPAQEMLTRVLAIDVQVGRT
GKLTPVAKLAPVFVGGVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVVLPE
TPVTESGEAVTPRGPIFTMPRACPVCGSVALREEGEADYRCTGGLFCSAQRKQSILHFAQ
RRAVEVEGLGDKLVDQMVDAGIIHTLPDLYKLGFTALANLDRMADKSAQNIVDALEKSKH
TTLPRFLFGLGIRHVGEATAKELARHFGKLDAIMAASEEQLLEVTDIGPIVAQSLRTFFD
QPHNREVVEQLRACGVTWPEGEPAQRAPTPFSGKTFVLTGTLPSLGREEAKALIEAAGGK
VAGSVSKKTSYVVAGAEAGSKLEKAQELGITVLDEASLLKLLAGED
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgttcacacccgatatgtttgccccagaggctaccaacacggcggatgcccagctgatc
acccagctgcgtgaaaccctgcatacacacgcccacagctactacgtgcttgatgccccc
accgtgccggatgccgaatacgaccgcttgttccggcaactgcaagacctggaagcgcgc
caccctgaactggcctcgcccgattcccccactcagcgtgtcggtggcaaaacgctggac
caatttgcccaggtgcgccatgccgtgcccatgctcagcatcaaaaccgagaccgacacc
cgcgccagtggggcggagaattttgatgcccgtattcgccgtgaactgggcctgaccgag
gttgacccggccatcgagtacgtggccgagcccaagtttgatggcctggccatgaacctg
cgttatgaacacggtgtgctggtgcaagccgccacccggggcgatggggaagtgggtgag
gatgtgacgcaaaacatccgcaccatcggccaaattcccctgaagctgcccgcaggtgtg
cccgaggtgctggaagtgcggggcgaggtttacatgcgccgcgacgacttcgaggccttg
aacgagcgccagcgcctgcgtattgcggcgggtgagcggggtgaaaaaacctttgtcaac
ccacgtaacgccgccgccggtgcggtgcgccagcttgacccggccattgccgcccagcgc
cctttaagcttttttgcctatggcctgggtgagatcagtccaaccgggcagggtgccgcg
cagtggtctacccactacgccttgctgcaaaccctgaaatcttggggttttccggtctgt
gcccttgtcaaacaagcgcaaggagctattgaattgatagcgttttacgaaaccattggg
cagcagcgtgatggcctgggttacgacatcgacggtgtcgtctacaaggtcaacagcctg
gcactgcaacggcaactgggttttgtcacccgcgaaccacgctgggccgtggcccacaag
tttccggcgcaagaaatgctcacccgcgtgctggcgattgacgtgcaggtgggccgcacc
ggcaagctgaccccggtggccaaactggccccggtgtttgttggcggtgtcaccgtgacc
aacgccaccctgcacaacgaagacgaagcccgccgcaaagacgtgcgggtgggcgacacg
gtgatcgtgcgccgcgccggcgatgtgattcccgaggtggtcagtgtggtgctgccagag
accccagtgacggaatccggcgaagccgtgaccccacgcggcccgatcttcaccatgccc
cgagcctgcccggtttgcggtagtgtggcgttgcgcgaagaaggcgaggccgactaccgc
tgcaccggcggcctgttttgcagtgcccagcgcaagcagtcgattcttcactttgcccag
cgccgcgcggtagaggtcgaggggttgggtgacaaactggtcgatcaaatggttgatgcc
ggcatcatccacaccttgcctgacctctacaaactcgggttcaccgctttggccaacctg
gatcgaatggctgacaaatcggcccaaaacatcgttgacgcgctggaaaaatccaagcac
accaccttgccgcgcttcttgtttggtctgggcattcgccatgtcggtgaagccaccgcc
aaagaactggcacgccacttcggcaagctcgatgccatcatggcagcttctgaggagcag
ttactggaagtgaccgacatcggccccatcgtggcccaaagcctgcgcaccttttttgac
cagccgcacaaccgcgaggtggtcgagcaattgcgtgcctgcggggtgacctggcctgaa
ggtgagcctgcgcagcgcgcacccaccccattcagtggcaaaacctttgtgctcaccggc
accttgcccagcctgggccgcgaagaagccaaagccctgatcgaagccgccggtggcaaa
gtggctggctcggtcagcaaaaaaaccagttacgtggtggctggagccgaggcgggcagc
aagctcgaaaaagcgcaagagctgggcatcaccgtgctggatgaagccagcttgctcaaa
ctgctggcaggagaagactga
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