Rhodoferax lithotrophicus: MIZ03_4164
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Entry
MIZ03_4164 CDS
T10289
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
rlh Rhodoferax lithotrophicus
Pathway
rlh00300
Lysine biosynthesis
rlh00550
Peptidoglycan biosynthesis
rlh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rlh00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
MIZ03_4164
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
MIZ03_4164
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rlh01011
]
MIZ03_4164
Enzymes [BR:
rlh01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
MIZ03_4164
Peptidoglycan biosynthesis and degradation proteins [BR:
rlh01011
]
Precursor biosynthesis
Amino acid ligase
MIZ03_4164
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
BCO29249
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Position
4279856..4281382
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AA seq
508 aa
AA seq
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MPTQLHAPEQAVAWLRSRITGVIRTDSRQVGPGDGFLAWPGAAVDARVHVAAALAAGARA
CLVEHRGSEAFAFTDERVATYLNLKQDCGQISSVWFAQPSAQLAVLAVTGTNGKTSSTWW
LAQALSNLKHFTPIPCGVVGTLGIGIPPHVVSTGLTTPDPLALQAAFAGFVAQGHQACAI
EASSIGIEEHRLDGTQIHTAVLTNLTQDHLDYHGDMSRYGAAKTRLFAWSGLRAAVINVD
DPFGQALAKQLAQTQPALDLWTLSMAETPATTTRLQAQDIRYEPLGVTFDVVEGTQRLSL
TTQLIGAYNIANVLGVIAAMRSLGVPLAAAAEACQHLTPVPGRMECVSVPGHALVAVDYA
HTPDALAKALEALQPLARARGGQLWCVFGCGGDRDTRKRPLMGAVAATHAQHVVVTSDNP
RSESPDAIISQILLGLTGVTGVQVEADRARAITQTLTQAAANDVVLLAGKGHEDYQEIAG
QRLHFSDIEQVRAAIGGCPANSPQEVHT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgcccactcaactccacgccccggaacaggccgtagcctggttacgcagccgcatcacg
ggcgtgattcgcaccgacagccgtcaggtcggcccaggcgatggctttctggcctggccc
ggtgcggcggtggatgcccgtgtgcatgtggctgccgctttggcggcgggtgcccgtgcc
tgcctggtggaacaccgtggaagcgaggcttttgccttcaccgacgagcgtgtcgccacc
tacctgaatttaaaacaggactgtggccagatcagcagtgtctggtttgcccagcccagc
gcacaactggccgtattggcagtgaccggcaccaatggcaaaacctccagcacctggtgg
ctggctcaagcgctctcaaatttgaagcactttacgcctattccatgcggagttgttggc
actttgggcataggaatcccgccccatgtggtcagcaccggcctgaccacgcccgacccg
ctggcgctgcaagccgcttttgccggatttgtcgcccagggtcaccaggcctgtgccatt
gaagcatcgtccatcggcattgaagaacatcgcctggacggcacacagattcacacggcc
gtgctcaccaacctcacacaagaccatctggactaccacggtgatatgagccgctacggc
gcggccaaaacccggctgttcgcctggtcaggcttgcgggctgcggtgatcaatgtggat
gatccgtttggccaggccttggccaaacaactggcccaaacgcaaccggcgctggacctc
tggaccctttccatggcagaaaccccggccaccaccacgcgcttgcaagcccaggacatc
cgttatgaacctttgggcgtaactttcgatgtggtggaaggtacacaacgcctgtccctg
accacccagctcatcggggcttacaacattgccaatgtgctgggcgtgatagccgccatg
cgcagtctgggcgtaccactggcggcagcggccgaagcctgtcaacatttgacaccggtc
cccggccgcatggaatgtgtcagcgtacccggtcatgccttggtggcggtggactatgcc
cacaccccggacgcgctggccaaagcgctggaggccctccaacccctggcgcgtgcacgt
ggtgggcaactctggtgtgtatttggttgtggcggcgaccgcgacacccgcaagcgcccg
ctgatgggggccgtggccgccacacacgcccaacacgtggtggtcaccagcgacaacccg
cgcagcgaatcccccgatgccatcattagccagattttgttgggcttgaccggtgtcacc
ggggttcaggtggaggccgaccgggcgcgcgccattacgcaaaccctgacccaggcggca
gcgaacgatgtggtgctgctggccggcaaaggccatgaggactaccaggaaatcgccgga
cagcgcctgcatttttcggacattgagcaggtccgggccgccatcggcggatgcccggcc
aactcgccacaggaggtgcacacatga
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