Rhodocaloribacter litoris: GQ464_001100
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Entry
GQ464_001100 CDS
T09819
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rlo
Rhodocaloribacter litoris
Pathway
rlo03030
DNA replication
rlo03410
Base excision repair
rlo03420
Nucleotide excision repair
rlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GQ464_001100 (ligA)
03410 Base excision repair
GQ464_001100 (ligA)
03420 Nucleotide excision repair
GQ464_001100 (ligA)
03430 Mismatch repair
GQ464_001100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlo03032
]
GQ464_001100 (ligA)
03400 DNA repair and recombination proteins [BR:
rlo03400
]
GQ464_001100 (ligA)
Enzymes [BR:
rlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GQ464_001100 (ligA)
DNA replication proteins [BR:
rlo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GQ464_001100 (ligA)
DNA repair and recombination proteins [BR:
rlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GQ464_001100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GQ464_001100 (ligA)
MMR (mismatch excision repair)
DNA ligase
GQ464_001100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GQ464_001100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QXD15572
LinkDB
All DBs
Position
complement(281697..283832)
Genome browser
AA seq
711 aa
AA seq
DB search
MNLLQATRDVQAKVHALLSGTGHLERDEAAALAGRLREVIEAHNYRYYVLDAPLITDAEY
DVLLQALRRLEARFPGLQTPDSPTQRVGGAPLDRFEKVRHPVPMLSLQNAFDFDELRAWY
ERCRRGLKAALGVEAPPAVTAELKIDGVAVALTYEAGRLVVGATRGNGVEGENVTENVRT
IRAIPLRIPVAGGTTADVPARLEVRGEIYIRKSDFEKLNARLAAAGEKTFANPRNAAAGS
LRQLDPRVTATRPLSFFAYAVGPVEGTVPPAQYELLAWLRGLGFPTNPHAARFTDLDALL
AFCERWAHARDALDYEIDGIVVKVDDFAYQEALGAISNAPRWAVAYKFPAREATTRLLDI
VVNVGRTGVIKPEAVLEPVLIGGVTVSQATLHNEEYVLSRDIRIGDVVVVKRAGDVIPQV
VRPVVEARTGSERPWRMPERCPACGNPLERLPDEADYYCVASDCPAQFIRLVEHYAGRDA
MDIEGLGAKLAVLLVEQGLLHTLADLYTLTLAQLLALEGFAEKRARNLLAAIEASKHRPL
SRLVFGLGIRHVGKTVAELLVAHFASLDALAGADVETLEAIEGIGEKIARSVVDWFRVED
NRVLVTRLREVGVNTRRLPGEAPPAPGESPVAGKTFVLTGTLPSLSRKEAEERIKRAGGK
VAGSVSKKTDYVVAGESPGSKYDRARALGVEIIDEARLLALLGDADGPPAR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttcttcaggctacccgggacgtacaggcgaaggtccacgcgcttctctccggc
accggccacctcgagcgtgacgaagccgccgcgctggccggccggcttcgggaggtcatc
gaggcgcacaactaccggtactacgtgctcgacgcccccctcatcacggacgccgagtac
gatgtcctgctgcaggccctgcgccgtctcgaagcacgttttcccggcctgcaaacgccg
gattcgccgacacagcgggtgggaggcgcaccgctcgaccggttcgagaaggtgcgtcat
cccgtccccatgctgtcgctccagaacgccttcgacttcgacgagctgcgggcgtggtac
gagcgatgccggcgcgggttgaaggcggcgctcggtgtggaggcgccgccggccgtcacg
gcggagttgaagatcgacggggtggcggtggcgctcacctacgaggcaggccggctggtc
gtcggcgccacgcgcggcaacggcgtcgagggggagaacgtcacggagaacgtgcggacg
atccgggccatcccgctgcgcatcccggtcgccggtggaacgacggcggacgtcccggcc
cgtctcgaggtgcgcggggagatctacatccggaagagcgacttcgagaagctcaacgcc
cgcctggcggctgccggggagaagacgttcgccaacccccggaacgccgcggccggcagt
ctccgccagctcgacccgcgggtgacggctacccggccgctgagtttcttcgcctatgcc
gtcgggccggtcgaaggcacggtgcccccggcgcagtacgagctgctggcctggctgcgc
gggctcggcttcccgacgaacccgcatgccgcccgctttacggacctcgacgccctcctg
gcgttctgcgagcggtgggcacacgcccgcgacgcgctggactacgagatcgacggtatc
gtcgtcaaggtcgacgacttcgcctaccaggaagccctcggtgccatctcgaacgccccg
cgctgggccgtggcctacaagtttcccgcgcgggaggcgacgacccgcctgctcgatatc
gtcgtgaacgtgggacgcacgggcgtcatcaagcccgaagccgtgctcgagcccgtcctg
atcggcggggtgaccgtctcgcaggcgacgttgcacaacgaggaatacgtcctcagccgc
gacatccgcatcggcgacgtggtggtagtcaagcgggccggcgacgtgatcccgcaggtc
gtccggccggtcgtcgaggcgcgcacggggtcggagcgtccctggcgcatgccggagcgt
tgccccgcctgcggcaacccgctcgaacggctgccggacgaggccgactactattgcgtg
gcctcggactgcccggcgcagttcatccggctggtcgagcactatgccgggcgggatgcc
atggacatcgaggggctgggggcaaagctcgccgtgctgctggtcgagcaggggctgctg
cacacgctggccgacctctacacgctcaccctggcacagctgctggcgctcgaagggttt
gcggagaagcgggcgcggaacctgcttgcggccatcgaggcatcgaagcaccggccgctg
agccggctcgtgttcgggctcggcatccggcacgtgggcaagacggtcgccgagctgctc
gtggcgcactttgcgtcccttgacgccctggccggggccgatgtggagacgctcgaggcc
atcgaggggatcggggaaaagattgcgcggagcgtggtggactggttccgcgtcgaggac
aaccgggtgctggtgacccggctgcgggaggtgggggtgaacacccggcgcctgcccggg
gaagcgccgccggcgccgggggagagcccggtggccggcaagacgttcgtgctcaccggg
acgttgccgtcgctcagccggaaagaggcggaggagcgcatcaagcgggccggggggaag
gtggccggtagcgtcagcaagaagacggactacgtggtggccggcgagagccccggttcg
aagtatgaccgtgcccgggcgctcggggttgagatcatcgacgaggcccgtctgctcgcc
ttgctgggggacgcagacggcccgccggcgcggtga
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