Rhizobium leguminosarum bv. trifolii CB782: RLEG12_24015
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Entry
RLEG12_24015 CDS
T03015
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rlu
Rhizobium leguminosarum bv. trifolii CB782
Pathway
rlu03030
DNA replication
rlu03410
Base excision repair
rlu03420
Nucleotide excision repair
rlu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RLEG12_24015
03410 Base excision repair
RLEG12_24015
03420 Nucleotide excision repair
RLEG12_24015
03430 Mismatch repair
RLEG12_24015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlu03032
]
RLEG12_24015
03400 DNA repair and recombination proteins [BR:
rlu03400
]
RLEG12_24015
Enzymes [BR:
rlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RLEG12_24015
DNA replication proteins [BR:
rlu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RLEG12_24015
DNA repair and recombination proteins [BR:
rlu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RLEG12_24015
NER (nucleotide excision repair)
GGR (global genome repair) factors
RLEG12_24015
MMR (mismatch excision repair)
DNA ligase
RLEG12_24015
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RLEG12_24015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
5_3_exonuc
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AHG46123
LinkDB
All DBs
Position
complement(2486267..2488423)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEAR
FPELIREDSPSRHVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNKLPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPADTQFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEDHDIREGDTVIVQRAGDVIPQILDVVMEKRA
AAASSYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFEHEDASLQIRTAPEIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYSTYEAFATAMTEAAPLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNIEVITRLLEEVTPQQAEQPVTTGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgacacgttgacgatcgaagaggctgccgccgaactc
gagcggctggcaaaggagatcgcgcatcacgacgcgctctaccatggcaaggaccagccg
gagatttccgatgccgattacgatgcgctgaagcgccgcaacgatgcgctggaggcgcgg
tttcccgagttgatccgcgaggacagcccgtcgcggcatgtgggggcagcaccctccgtc
accttctcgcccgtcgtccatgcacggccgatgctgtcgctcgacaacacgttttcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgtttcctcggccgcctgccggaccag
tcgatcgcttttaccgccgaaccgaagatcgacggtctgtcgatgtcgatccgttatgag
aacggcaggctggtgacagctgcgacgcgcggcgacggcacgacgggggaaaacgtcacc
gccaatattcgcaccattgccgaaatcccgaataaactgccgaagggtgtccccgcggtc
gtggagatccgcggcgaagtctatatggccaagagcgacttcctggcgctgaaccggcag
atggaagcggagggcaagcagacctatgtcaatccgcgcaatacggccgccggatcgctg
cgccagctcgatgccaaggtgacggcgagccgcaagctgaaattcttcgcctatgcctgg
ggcgaaatgtcggaaatgccggccgatacgcagttcgccatggtgcagaccttcaaggat
tggggttttcctgtaaacccgctgatgaagcggctgaattcggtcgccgacatcctggcg
cattatgacgagatcggcctcgagcgtccggatctcgattacgacatcgatggcgtcgtc
tataaggtcgacagtctcgagctgcaggcccgtctcggcttccgctcgcgttcgccgcgc
tgggcgaccgcgcacaaatttccggccgaacaggccttcaccgaggtcgagaagatcgag
atccaggtcggccgcaccggggcgctgacgccggtggcgcggctgaagccgattaccgtt
ggcggcgtggtcgtcaccaatgcgacactgcacaacgaggattacatcaagggtatcggc
aatagtggcgagcgcattcggccggaggaccacgatatccgcgaaggcgataccgtcatc
gtccagcgcgccggcgacgtcattccgcagatcctcgacgtggtgatggaaaaacgcgcg
gctgccgccagctcatatgagtttccgaaaacctgcccggtctgcggttcgcatgcggtg
cgcgaggtcaacgagaagaccggcaagatggattcggtgcgccgctgcaccggcggtttc
atctgccgggcgcaggcgaccgagcatctgaaacacttcgtttcgcgcaatgccttcgat
atcgaggggctgggttcgaagcagatcgacttcttcttcgaacatgaggacgcgtcgctg
cagatccgcaccgcgcccgaaatcttcacgctggagaagcgccagcagcaatcgctgacc
aagctggagaatatcgacggcttcggcaaggtcagcgtcggcaagctgtatgcggcgatc
aacgaacggcgcagcattgcactccatcgcttcatctatgcgctcgggatccgtcatgtc
ggcgagaccacggcaaagctgctggcgcgctcctacagcacttacgaagcctttgccacg
gcaatgacggaggcagcgccgctttccggcgacgcctggaacgatctcaatgccatcgag
ggcatcggcgaagtggtggcgcgtgccatggtcgagttctacaaggaaccgcgcaatatc
gaggtgatcacccggctgcttgaggaagtgacgcctcagcaggccgagcagccggtgacg
acaggcagcccggtcgccggcaagaccgtggtctttaccggctcgctggaaaaattcacc
cgcgacgaggcgaaggcgagggcagaaagcctcggcgccaaggtcgcgggatcggtgtcg
aagaagaccgacatcgtcgtcgccggccccggcgccggctccaagctcgacaaggcgcgc
gaactcggcgtgcagacgatggacgaggacgagtggctggcactgatcagcgggtga
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