Rubrobacter marinus: GBA65_20050
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Entry
GBA65_20050 CDS
T07670
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmar
Rubrobacter marinus
Pathway
rmar03030
DNA replication
rmar03410
Base excision repair
rmar03420
Nucleotide excision repair
rmar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GBA65_20050 (ligA)
03410 Base excision repair
GBA65_20050 (ligA)
03420 Nucleotide excision repair
GBA65_20050 (ligA)
03430 Mismatch repair
GBA65_20050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmar03032
]
GBA65_20050 (ligA)
03400 DNA repair and recombination proteins [BR:
rmar03400
]
GBA65_20050 (ligA)
Enzymes [BR:
rmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GBA65_20050 (ligA)
DNA replication proteins [BR:
rmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GBA65_20050 (ligA)
DNA repair and recombination proteins [BR:
rmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GBA65_20050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GBA65_20050 (ligA)
MMR (mismatch excision repair)
DNA ligase
GBA65_20050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GBA65_20050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Mustang
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QIN80428
UniProt:
A0A6G8Q1U7
LinkDB
All DBs
Position
3962409..3964412
Genome browser
AA seq
667 aa
AA seq
DB search
MTEGTDIRGRIEELRERIRYHNRRYYVEDAPEVSDAEYDALYGELEALEGEHPELVTADS
PTQRVGGEPLEGFEQVRHAVPMLSLANARKLDDLHEWDARVRRLLGEDEEIEKLRYVTEL
KIDGLAVSLRYEDGRYVRGATRGNGTVGEDVTANLRTIRAVPEGLSDDPPGVLEPRGEVY
IPLDKFDEFNGRQEAGGKRPFANPRNLAAGSIRQLDPKITAERPLTMFCYGIGEGGEPYE
SHSSALDALKGYGLRVNPYKVHDSIEGVAKECAYWAEHRESVGYQIDGVVVKVDSREQQR
ALGSVAKAPRWAIAFKFEPLAARTRLNEIIINVGRTGALTPQAMLEPVNVGGVTISRATL
HNEDYVREKGILVGDLVVVERAGDVIPQVVRALVEERTGDERPFEMPKVCPVCGEPVSRP
EGEAVTRCVNARCPAQALEHVIHWATKAAMDIEGLGEKVATKLFDLGLIRDVADLYGLKA
EEIEPLEGFAEKSAQNLVRSIEKSKEQPFSRVLYALGIRHVGSVTASLIAERFDGDDLLA
GVTVEALTEINGVGAVVARAVVDYFALEDNRDLVRRLKDAGLNLEKESAGPQDGPLAGKR
VVITGTLSRPRGYFVEKLEEAGGTFTSSVSKNTDYVLAGEEAGSKLEKANSLGVPVLDEA
GFEELLT
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaggggacagatatccggggcaggatcgaggagctcagggagcgcatccgctac
cacaaccgccgctactacgtcgaggacgcgccggaggtctccgacgccgagtacgacgcc
ctctacggcgagctcgaggccctcgaaggcgagcaccccgagctcgtcaccgcggactcc
ccgacgcagagggtggggggcgagcccctcgagggcttcgagcaggtccgacacgccgtc
ccgatgctctccctcgccaacgcccgcaagctcgacgacctccacgagtgggacgcgcgc
gtccggcgcctgctgggggaggacgaggagatagagaagctccgctacgtgacggagctc
aagatagacgggctcgcggtctcgttgcgctacgaggacggccgctacgtccggggcgcc
acgcggggcaacggaacggtgggcgaggacgtgacggcaaacctgaggaccatccgcgcc
gtccccgaggggctctccgacgacccgcccggggtgctggagccgcgcggcgaggtctac
atcccgctcgacaagttcgacgagttcaacgggaggcaggaggccggggggaagaggccg
ttcgccaacccgcgcaacctcgcggcgggctccatccgccagctcgacccgaagatcacc
gccgagaggccgctgacgatgttctgctacggcatcggcgaggggggcgagccctacgag
agccactcttccgccctcgacgccctgaagggctacgggctgcgcgtcaacccctacaag
gtccacgactccatcgagggggtggcgaaggagtgcgcctactgggccgagcaccgcgag
tcggtcgggtaccagatcgacggggtggtggtaaaggtcgactcccgcgagcagcagcgg
gccctcggctcggtcgccaaggccccgcgctgggccatcgcgttcaagttcgagccgctc
gccgcccggacgcgcctcaacgagatcatcatcaacgtcgggcgcaccggcgccctgacg
ccgcaggccatgctcgagccggtcaacgtcggcggcgtgacgatctcgcgcgccacgctg
cacaacgaggactacgtcagggagaagggcatcctcgtcggcgacctcgtcgtggtcgag
cgggcgggggacgtgatcccgcaggtggtccgcgccctcgtcgaggagcgcacgggcgac
gagcgtcccttcgagatgccgaaggtctgccccgtctgcggggagccggtcagccggccc
gagggcgaggcggtcacccgctgcgtgaacgcccgctgccccgcgcaggccttagagcac
gtcatccactgggccacgaaggcggcgatggacatcgagggcctcggcgagaaggtcgcc
acgaagctcttcgacctcgggctcatacgcgacgtcgccgacctgtacggcctgaaggcg
gaggagatcgagccgctcgaaggcttcgccgagaagagcgcccagaacctcgtccgctcc
atcgagaagagcaaggagcagcccttctcgcgcgtcctctacgccctcggcatccgccac
gtcgggagcgtgaccgcgagccttatagccgaacgcttcgacggcgacgacctgctcgcc
ggcgtgaccgtcgaggccctgacggagatcaacggcgtcggcgcggtcgtcgcccgcgcc
gtcgtcgactacttcgccctcgaagacaaccgggacctcgtccgccgcctcaaggacgcg
ggcctgaacctcgagaaggaatccgcgggccctcaggatggccctcttgcgggcaagcgc
gtcgtcataaccggtaccttgagccgccccaggggctactttgtggagaagcttgaggag
gcaggcggcacgttcacctcctccgtcagcaagaacaccgactacgtgctcgccggagaa
gaggcgggctccaagctggagaaggccaactcccttggcgtccccgtactcgacgaggcg
ggcttcgaggagctcctcacctag
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integrated database retrieval system
