Rhopalosiphum maidis (corn leaf aphid): 113551459
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Entry
113551459 CDS
T06065
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113551459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113551459
Enzymes [BR:
rmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113551459
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113551459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
113551459
NCBI-ProteinID:
XP_026809511
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All DBs
Position
2:complement(22626632..22634378)
Genome browser
AA seq
895 aa
AA seq
DB search
MASTTSKPCNKIPFELFCRVCEDIYNAKNEKKVLILEKFISKCRGSIEKSENLNVEDTFY
PALRLLLPVSDKQRGAYGVKETALGKLYVKILCLAKDSPDAQKLLNFRVPKVSGSTAGDF
AETLYWVIRSRFEDNSSMTIADVNLLLDEIALKHATNESRDVEQILQSALFKFSANEQKW
FVRLLLKDMRLGIAHTKILKAYHCDANNLYEVCNDLTKVCKMLNNPSVTLHEISVNLFEP
FCPMLSQRCEITDDSKIMKTIKSEELFVDIKLDGERFQLHWSKEKNLFKYFSRKGNDYTD
TYGCNDANGVLSPILAKQFKPEVKNCILDGEMMCYNTKYKSFSTKAMNIDVKKLRIGNTH
QPCFCVFDILYYNDLVITNRPLEERLAILNTIFDPLEGIFVHTTRHKARKNDLMKHLNNA
IDNYEEGIVVKDPLSIYKPNSRNAGWYKIKPEYTDGALIELDLLVIGGYYGEGKKRGVVS
HFLMGLLEKDGESFKYSAISRVSSGFSTEELADLSRKLSPHWKRFNPKDMPPNIEWGKEK
PDLWIEPESSVIVQVKATEIMTSHTFKSKITLRFPRIEKVRYDKPWHDCMTVKEFESIIK
QTEGKLYTSRTDETNSSSKIRKSCVTLAVDKKFQGPNLRDINYINNMFEEKEFCVLNDSE
TLSKNEIEKKILEYGGQVVQNPGNDTFCVLANNIKHIRAHAIKLSGKHSIISTKWILSCF
NDNEFLNWTPENVLFLSKEHQLLMDEKFDKYGDSYTELATVETLRQAMDRVELDDDLINT
EVDAFLDFKNELFNEEQCFKIFKKYQVYFDDLNLDNLPVRNFHTNTVLEMLIFKFNGGTV
CKNIDSNTTHVVIHSSSKNNANKYQTMKRDRNQAFEIVDENWITQQIKWQTIKKK
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacaaccagtaaaccttgcaacaaaataccatttgaattattttgtcgtgta
tgcgaagacatttataatgctaaaaatgaaaagaaagttctcatcctagaaaaattcatt
agtaaatgccgagggtcaattgagaaaagtgaaaacttaaatgtagaagacacattttat
ccggcattaaggttactgttacctgtatcagacaaacaaagaggagcgtatggtgttaaa
gaaactgcgttgggaaagttatatgtaaaaatattatgccttgcaaaagacagtccagat
gctcaaaaacttttgaatttcagggtgccaaaagtttctgggtctacagccggagacttt
gctgaaactctgtattgggttataagaagtcgatttgaagacaatagttcaatgactatt
gctgatgtcaatctattattagatgaaatagccttgaaacatgctacaaatgaatcaagg
gatgtggaacaaattttacagtcagcactattcaaattcagtgctaatgagcaaaaatgg
tttgttcgtctattattaaaagatatgcgcttaggtatagctcatacaaaaatattaaaa
gcgtatcattgtgatgccaataatttatatgaagtttgcaatgatttaacaaaagtatgt
aaaatgctgaataatccgtcagtgactttacatgagatatctgttaatttatttgaaccc
ttttgtccaatgctaagtcaacgctgtgaaattactgatgacagtaaaataatgaagaca
attaagagtgaagaattatttgttgacattaaattggacggtgaaagatttcaacttcat
tggtctaaagaaaaaaacctttttaaatatttttccagaaaaggcaatgattatacagat
acatatggttgtaatgacgctaatggtgttctgagtccaatactagcaaaacaatttaaa
cctgaagtaaagaattgcatcttagatggtgagatgatgtgttataacactaagtacaaa
tcattttccacaaaagctatgaatattgatgtgaaaaaattaagaatagggaatacacat
caaccatgtttttgtgtattcgatattctttattacaacgatttagtaattacaaaccgt
ccattagaagaacgattagctattttaaatacaatatttgatccattagaaggaattttt
gtacataccacaagacataaagcaagaaaaaatgatttaatgaagcatcttaacaatgct
attgataactatgaggaaggcattgtagtcaaagatccattatcaatttataagccaaat
tcacgaaatgcaggatggtataaaattaaaccagaatatactgatggtgcgctcattgaa
ttagatcttttagttattggtggatactatggtgaaggtaaaaaacgaggtgttgtgagt
catttcctaatgggtcttttggaaaaagatggtgaatcatttaaatattctgctatcagt
cgagttagttcaggattttcaacagaagaactagccgatttatcaagaaaattgtctcct
cactggaaaagatttaatcctaaagatatgccaccaaacattgaatggggtaaagagaag
ccagatctttggattgaacctgaatcgtcagttattgtacaggtgaaagcaacagaaatt
atgacaagccacacgtttaaaagtaaaataacattacgtttcccacgaatcgaaaaagtt
cgttacgacaaaccatggcatgactgtatgactgttaaggaatttgagtctataattaag
caaacggagggaaaattatatacttcccgtactgatgaaacaaattcttcaagtaaaatt
agaaaatcttgtgtgacgttagccgttgataaaaaatttcaaggcccaaatttaagggat
atcaattatattaataatatgtttgaagaaaaagaattctgtgtcctcaacgatagtgaa
actttgagcaagaatgaaattgaaaaaaaaattcttgaatatggtggtcaagtcgtacaa
aaccctggcaacgataccttttgtgttcttgccaacaatattaagcatataagggcacat
gcaataaaattatcaggcaaacatagtataataagcacaaaatggatactgtcgtgtttt
aatgataatgaatttcttaactggacgcccgaaaatgttttgtttttatccaaggaacac
cagctattaatggatgaaaaatttgataagtatggtgacagttatactgagttagcaact
gttgaaacattacgccaggcaatggatcgtgttgaactagatgatgatttaatcaacaca
gaagttgatgcttttttggatttcaaaaacgaactctttaacgaagaacaatgtttcaaa
atttttaaaaaataccaagtttattttgatgatttaaatttagataatttgccagtcaga
aatttccacacaaacacagtgttggaaatgctgatatttaaatttaatggaggcacagtc
tgtaaaaatattgatagcaatactactcatgttgtaattcattcaagtagtaaaaataac
gctaataagtatcaaactatgaaaagagatcggaaccaagcatttgaaattgtcgatgag
aactggattacacaacaaataaaatggcagacaataaaaaaaaaatga
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