Rhopalosiphum maidis (corn leaf aphid): 113555685
Help
Entry
113555685 CDS
T06065
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113555685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rmd03041
]
113555685
Spliceosome [BR:
rmd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113555685
Complex C
U5 SnRNP specific factors
113555685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
ABC_tran
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
113555685
NCBI-ProteinID:
XP_026815996
LinkDB
All DBs
Position
4:complement(40259408..40265093)
Genome browser
AA seq
975 aa
AA seq
DB search
MDSDLYDEFGNYIGPELESDEEEEEQPPSPEPEPQDIDMIEESEDGPEEPGMSVVLHEDK
RYYPSAVEVYGPDVETLVQEEDELPLTVPLVAPVKQHNFQIKEQHLPNTTYNMEYLADLM
DVAGLVRNVALVGHLHHGKTSLVDCLVRQTHPDLGQLNLDSADADLMRYTDTLMTERQRG
VSIKATPVTLVLPDVNSKSYLMNIFDTPGHVNFSDEVTAALRICDGAVIFVDAAEGVMLN
TERLIKHAIQEKIAITICVNKIDRLMLELKLPPQDAYYKIKHIIDEVNSLLSLHSQNDPS
RIVSPVIGNVCFASAQYAVCFTLKSFAKLYANHYPNVKVDSFSKVLWGDVYFNPKTRKFS
KKSPHNSAQRSFVEFILEPLYKLFAQVIGDVDTTLPDILDELGIKLTKREMNINIRPLLR
LVCGRFLNDLSGFVDMCVNHIPSPAENAKNKIDTIYTGPQDTELAKDMLDCNPDGRLMVH
STKMYPTDDCTFFQVLARVMSGTLHAGQEVKVLGENYSLVDEEDSRVMTVGRLWVHEARY
KVEVNRVPAGNWVLIEGIDQPIVKTATITDLITTDDLFIFRPLKFNTQSVIKIAVEPVNP
SELPKMLDGLRKVNKSYPLLITRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVAD
PVVAFCETVVDTSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENQVVDIAWDKKKIGEF
FQSKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKNILRSIKDSIVQGFQWGTREG
PLCEEPIRNVKFKILDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLYVEVQ
APADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFC
LSVFHHWQIVPGDPLDKSIVIKPLEPQPATHLAREFMVKTRRRKGLSEDVSINKFFDDPM
LLELARQDVSLNYPM
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggattctgatctttatgatgagtttggtaattacattgggccagaattggaatctgat
gaagaggaagaagaacaaccgccgtctcctgagccagaacctcaggacattgatatgatt
gaggagagtgaagatggaccagaagaaccgggtatgagcgttgttttacatgaagataaa
cgttattatccgagtgctgttgaagtgtatgggcctgacgtggaaacattagttcaagaa
gaagatgaattaccattgacagtaccattggttgctcctgttaaacagcataatttccaa
atcaaagaacaacatttgcccaacacaacatataatatggagtatttggcagatttaatg
gatgttgcaggcttagtacgaaatgttgcattggttggacatcttcaccatggcaaaacc
agcttagtagattgcttagttcgtcaaacccatccagacttgggacaattaaatttagat
tcagcagatgctgatttgatgcgctacacagatactttaatgactgaacgtcaaagaggt
gttagtattaaagcaactccagtaacattagttttacctgatgttaattctaaatcatac
ttaatgaacatttttgatacacctggtcatgttaatttttctgatgaagtaacagctgcc
cttagaatttgtgatggagctgtaatatttgttgatgctgcagagggcgttatgttaaat
acagaacgtttgataaaacatgctatacaagaaaaaatcgcaattactatttgtgtgaat
aaaattgacagacttatgttggagcttaaacttcctcctcaagatgcatattacaaaatt
aaacatataattgatgaagtaaattccctgttaagtttacattcgcagaatgatccatca
cgcattgtttcaccagttataggaaatgtttgttttgcatcagctcaatatgctgtttgt
ttcacattaaagtcatttgctaaactttatgcaaatcattatcccaatgttaaagttgac
agtttttcaaaagttttatggggtgatgtttactttaatccgaaaactagaaaattctcc
aaaaaatctcctcataacagtgcacaaagaagttttgttgagttcatattagaaccatta
tataaattatttgctcaagtaattggtgatgtagacacgactctccctgatattttggat
gaacttggaattaaactaacaaaacgtgaaatgaatattaatatacgaccactattacgc
ctcgtttgtggacgtttcttaaatgatctcagtggttttgtggacatgtgtgttaatcat
ataccttcaccagcagaaaatgcaaaaaataaaatagatacaatttatacaggtcctcaa
gacactgaactagctaaggacatgcttgattgcaatccagatggtcgtttaatggtgcat
agtactaaaatgtatcctactgatgattgtaccttcttccaagtattagctcgagtaatg
agtgggacattgcatgctggacaagaagtaaaagttttaggtgaaaactattctttggtt
gatgaagaagattctagagtaatgacagttggaagattatgggtacatgaagctagatat
aaagttgaagtaaatagagtaccagctggcaattgggttctaattgaaggcattgaccaa
ccaattgttaaaactgcaacaataacagatttaataacaactgacgatttatttatattc
agaccattaaaattcaacactcagtctgttataaagattgcagttgaacctgtaaatcca
tctgaactacccaaaatgttggatggtttgagaaaagtcaacaagtcttatcctctactt
attactcgtgttgaagaatctggagaacacgttatacttggtactggtgaattgtactta
gattgtgtaatgcacgatttaagaaagatgtattcagaaattgatataaaagtggcagat
ccagttgttgctttttgtgaaactgttgttgatacatcatcattaaaatgctttgctgaa
actccaaacaaacgtaataagataacaatgattgcagaaccattagaaaaaggccttgct
gaagatattgaaaaccaagtggttgacattgcatgggacaagaaaaaaattggtgaattt
ttccaatctaaatatgattgggatttacttgcagctcgttccatatgggcatttggtccc
gatactactggccctaatattcttgtagatgatactctaccatctgaagttgacaaaaat
attcttagatctattaaggattctattgttcaaggttttcaatggggtactagagaggga
ccattatgtgaagaaccaattcgtaatgttaaatttaaaatattagatgcagtcattgcc
cctgaaccattacatagaggaggaggacaaattattccaactgctcgtagagtagcttac
tcggcatttcttatggcaacacctcggttgatggaaccatatctgtatgttgaagtccaa
gctccagcagattgtgtttctgctgtatatactgtattagctaagagaagaggacacgta
acacaagatgctcctgttccaggatcaccactgtataccatcaaagcttttattcctgcg
attgattcatttggttttgaaactgatttacgtactcatactcaaggtcaagcattttgt
ttgtctgtattccatcattggcagattgtccccggtgatccacttgataaaagtatagtt
atcaaacctttggaaccacaacctgctacacatctggctcgagaatttatggtaaaaact
cggaggcgaaaaggcttaagtgaggatgtttccataaataaattctttgacgatcctatg
ttattagaattagccagacaagatgtatctcttaattaccctatgtaa
DBGET
integrated database retrieval system
