Rhodothermus marinus SG0.5JP17-172: Rhom172_1266
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Entry
Rhom172_1266 CDS
T01606
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03030
DNA replication
rmg03410
Base excision repair
rmg03420
Nucleotide excision repair
rmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rhom172_1266
03410 Base excision repair
Rhom172_1266
03420 Nucleotide excision repair
Rhom172_1266
03430 Mismatch repair
Rhom172_1266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmg03032
]
Rhom172_1266
03400 DNA repair and recombination proteins [BR:
rmg03400
]
Rhom172_1266
Enzymes [BR:
rmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rhom172_1266
DNA replication proteins [BR:
rmg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rhom172_1266
DNA repair and recombination proteins [BR:
rmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rhom172_1266
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rhom172_1266
MMR (mismatch excision repair)
DNA ligase
Rhom172_1266
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rhom172_1266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AEN73193
LinkDB
All DBs
Position
1453036..1455174
Genome browser
AA seq
712 aa
AA seq
DB search
METHTAPQTAEARLLEATHALLQTVRQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLD
NPLIPDADYDLLMQALRKLEARFPELVTPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAF
GEEDVRAWYERCCRMLAERLGHPVQPAVTAELKIDGLAMALTYENGVLTVGATRGDGIEG
ENVTQNVRTIPAIPLRIPVDPSIGPPPARLEVRGEVYMRKRDFERLNAQLQARGERPFAN
PRNAAAGSVRQLNPQVTASRPLSFFAYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHAR
RFERLDDVLEYCRYWTEHRDELDYEIDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAR
EAITRLLDIMVSVGRTGVVKPVAVLEPVEVGGVTVSQATLHNEDYVRSRDIRIGDLVVVI
RAGDVIPQVVRPVVEARTGNERPWRMPERCPSCGSQLVRLPGEADYYCVASDCPAQFVRL
LEHFASRDAMDIEGMGSQVARQLAESGLVRRLSDLYRLKLEDLLKLEGFAETRARNLLRA
IEASKRRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELAALEGVGPITAES
IANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTGALPHLTRKEAEEL
IKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLRLLGMK
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggagacgcacaccgcaccgcaaaccgccgaagcacgcctgctggaggccacacacgcg
ctgttgcaaactgtccgacagcgcgacctggaagccatcgaccgcaaggaggccgaggcg
ctggcggcccggctccgggaagtgctcaaccagcacgcctaccgctattacgtactggac
aacccgctcatcccggacgcggactacgacctgctcatgcaggcgcttcggaagctcgag
gcgcgtttcccggagctggtcacgcccgactcacccacgcagcgcgtgggaggaccgccg
ctgggacgcttcgaaaaggtgcgccatccggagccgctcctttcgctcaacaacgctttt
ggcgaggaagacgtgcgcgcctggtacgagcgctgttgccggatgctggccgagcggctc
gggcatccggtacagccggccgtcaccgccgagctgaagatcgacgggctggccatggcg
ctgacgtacgaaaacggcgtgctgaccgtcggtgctacgcgcggtgacgggatcgaaggc
gaaaacgtcacgcagaacgtgcgcacgatcccggccatcccgctgcgcatccccgtcgat
ccgtcgatcggaccaccaccggcgcggctggaagtgcggggcgaggtgtacatgcgcaag
cgcgacttcgaacgcctgaacgcgcagctccaggcccggggcgagcggcccttcgccaac
ccgcgcaatgcggcggccggcagcgtgcgccagctcaacccgcaggtgaccgcctcgcgg
ccgctgagctttttcgcctacggaatcgggcccgtcgaaggcgccgaggtgcccgacagc
cagtacgaggtgctgcaatggctcgggcgcctgggcttcccggtcaacgaacatgcccgc
cgcttcgagcgcctggacgacgtgctcgaatactgccgctactggaccgagcaccgcgac
gagctggactacgagatcgacggggtcgtgctgaagatcgaccaccggccctggcaggcc
ctgctgggtgccatctccaatgcgccccggtgggcggtggcctacaaattcccggcccgt
gaggccatcacgcgtctgctggacatcatggtcagcgtggggcgtaccggcgtggtcaag
ccggtggccgtgctggagcctgtcgaagtcggcggcgtgacggtctcgcaggccacgctg
cacaacgaagactacgtgcgcagtcgcgacatccggatcggcgatctggtggtggtgatc
cgggccggcgatgtgattccgcaggtggtgcgtcccgtggtcgaggcgcgtacgggcaac
gagcgtccctggcgcatgcccgagcggtgtccgtcatgcggcagccagctggtgcggctg
cccggcgaggccgactattactgtgtggcgtccgactgcccggcgcagttcgtgcggctg
ctggagcatttcgccagccgcgacgccatggacatcgaaggcatgggcagccaggtggcc
cggcaactggccgagtcgggtctggtgcgacggctttcggacctgtaccggctgaagctg
gaagacctgctgaaactcgaaggctttgccgagacgcgtgcgcgcaatctgctccgggcc
atcgaagcctcgaagcggcggccgctgagccggctgctcttcgggctgggcatccggcac
gtgggcaagacgaccgccgagttgctcgtgcagcgcttcgcgtcgatcgacgagctggcc
gcggctacgatcgacgaactggccgcccttgaaggcgtgggaccgatcacggccgaaagc
attgcgaactggttccgtgtcgaagacaaccggcgcctgatcgaagagctgaaggaactg
ggtgtcaacacgcagcggttgcccgaagaggcaccggcggccgaaagtccggtgcgcggc
aagacgttcgtgctgacgggcgctttgccccatctcacgcgcaaggaggccgaggaactg
atcaagcgggccggcggtcgcgtggccagcagcgtcagccgcaacacggactacgtcgtc
gtgggcgaaaaccctggcagcaagtacgaccgtgcccgccagctcggcatcccgatgctc
gacgaagacggcctgctgcggctgctggggatgaagtag
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