Roseivivax marinus: LVO79_10955
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Entry
LVO79_10955 CDS
T08313
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmh
Roseivivax marinus
Pathway
rmh03030
DNA replication
rmh03410
Base excision repair
rmh03420
Nucleotide excision repair
rmh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVO79_10955 (ligA)
03410 Base excision repair
LVO79_10955 (ligA)
03420 Nucleotide excision repair
LVO79_10955 (ligA)
03430 Mismatch repair
LVO79_10955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmh03032
]
LVO79_10955 (ligA)
03400 DNA repair and recombination proteins [BR:
rmh03400
]
LVO79_10955 (ligA)
Enzymes [BR:
rmh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LVO79_10955 (ligA)
DNA replication proteins [BR:
rmh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LVO79_10955 (ligA)
DNA repair and recombination proteins [BR:
rmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LVO79_10955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVO79_10955 (ligA)
MMR (mismatch excision repair)
DNA ligase
LVO79_10955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVO79_10955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UMA63562
LinkDB
All DBs
Position
complement(2325107..2327230)
Genome browser
AA seq
707 aa
AA seq
DB search
MAESETEVDALDEASARAELKRLAGILDAANTAYHTEDAPEITDAEYDRLKRRNAAIEAR
FPGLVRDDSPSQQVGAAPAEGFEKVTHAVRMLSLGNAFDAEEVTEFDRRIRRYLNHADDA
KLLYTAEPKIDGLSLTLRYEGGRLVTAATRGDGAVGENVTANARTIDDVPERLEGAPDVL
EVRGEVYMSHADFAALNERQSARGGKTFANPRNAAAGSLRQLDVEITRARPLRFFAYAWG
EVSAPLADSQMKAIERLAALGFSTNPLTRLCDGPDEMLAHYATIEEQRATLGYDIDGVVY
KVNDLALQARLGFRSTTPRWAIAHKFPAELAWTHLEAIEIQVGRTGALSPVARLTPVTVG
GVVVSNATLHNEDYIAGRDSAGQPIREGRDIRVGDWVQVYRAGDVIPKIADVDLFKRPDD
AAPYSFPTTCPECGSDAIREEGDSVRRCTGGLVCPAQQVEKLKHFVSRAAFDIDGLGAKQ
VEQFYRDEWIAEPADIFRLEARYGSGPRQLKNREGWGDRSAKNLFAAIDARRKIPLGRLI
FGLGIRHVGEVNAMLLARHYGTWEAFDEAMRAAEPLEGPAWDDLIGIDGVGEVLARALVS
TVNQPAERGSIERLLAEIEVEAAERPKTEGSPVAGKTVVFTGTLEKMTRAEAKARAEALG
AKVSGSVSARTDIVVAGPGAGSKEKKARELGVEVLDEDAWLDLISGA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagcgaaaccgaggtcgatgccctcgacgaggcgtccgcgcgggccgagctg
aagcgcctggccgggatactcgatgcggcgaacacagcctatcacaccgaagacgcgccc
gagatcacggatgcggaatacgaccgtctcaagcgacgcaatgcggcgatcgaggcgcgc
tttcccgggctcgtgcgggacgattccccgtcgcaacaggtcggcgcagcgccggccgag
ggcttcgagaaggtcacgcatgcggtccggatgctgtcgctcggcaatgccttcgatgcc
gaggaggtcaccgagttcgaccggcgaatccggcgctacctgaaccatgccgacgatgcg
aagctgctgtataccgccgaacccaagatcgacgggctgtcgctgacgctgcgctacgag
ggcggccgcctcgtcaccgcggccacgcgtggagatggcgccgtgggcgagaacgtcacc
gcgaatgcgcgcaccatcgacgacgtgccggagcggctcgagggggcgccggacgtgctc
gaggtccggggcgaggtctacatgagccacgccgacttcgcggccctgaacgagaggcag
tccgcgcgcggcggcaagaccttcgcgaatccgcgaaacgccgccgccggaagcctgcgc
cagctcgacgtggaaatcacccgcgcgcgtccgctgcgtttcttcgcctatgcttggggc
gaagtgtcggcgccgctcgcggatagccagatgaaggcgatcgaacgcctcgccgcgctc
ggtttctcgacgaacccgctgacccggctctgcgacgggcccgacgagatgctcgctcac
tacgcgacgatcgaggaacagcgcgccacgctcggctatgacatcgatggcgtcgtctac
aaggtgaacgatctcgcactgcaggcccggcttggcttccgctcgaccacgccccgctgg
gccatcgcgcacaagtttcccgccgagcttgcgtggacgcacctcgaggcgatcgagata
caggtcgggcgcaccggcgcgctttcgcccgttgcgcggctcacgccggtcacggtgggc
ggcgtcgtggtgtcgaacgcgacgctccacaacgaggactacatcgccggccgcgactcc
gccggtcagccgatccgcgaaggccgcgacattcgtgtcggcgactgggtgcaggtctat
cgcgcgggcgatgtcatccccaagatcgccgacgtcgacctcttcaagcggcccgacgac
gccgccccctacagttttcccaccacgtgccccgaatgcgggtcggacgccattcgcgaa
gagggagattcggtgcgccgctgcaccggcgggctcgtctgcccggcgcaacaggtcgag
aagctcaagcacttcgtctcgcgcgcggcgttcgacatcgacgggctcggcgccaagcag
gtcgagcagttctaccgcgacgaatggattgcggagccggccgacatcttccgcctggaa
gcgcgctacggctccgggccgcgccagctcaagaaccgcgagggctggggcgaccggtcg
gcgaagaacctcttcgcggccatcgatgcgcgccgcaagatccccctcgggcgcctgatc
ttcggcctcggtatccgccacgtgggcgaagtcaacgccatgcttctcgcgcggcactac
ggaacttgggaggccttcgacgaagccatgcgcgccgccgagccgctggaaggcccggcc
tgggacgacctcatcggtatcgatggcgtgggcgaggtgctggcccgagcgttggtctcc
acggtgaaccagccggccgaacgcgggtcgatcgaacgcctgctggccgaaatcgaggtc
gaggcggccgagcgtccgaagaccgaaggcagccccgtcgcgggcaagaccgtcgtgttc
accggcacgctcgaaaagatgacccgcgccgaggccaaggcgcgggccgaggcgctgggc
gccaaggtctcgggctcggtgtcggctcgcaccgacatcgtggtggccgggcccggcgcg
ggctcgaaggagaagaaggcgcgcgaactcggggtcgaggtgctggacgaggacgcctgg
ctcgacttgatctctggcgcatga
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