Rickettsia massiliae AZT80: RMB_02430
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Entry
RMB_02430 CDS
T01758
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmi
Rickettsia massiliae AZT80
Pathway
rmi03030
DNA replication
rmi03410
Base excision repair
rmi03420
Nucleotide excision repair
rmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RMB_02430 (ligA)
03410 Base excision repair
RMB_02430 (ligA)
03420 Nucleotide excision repair
RMB_02430 (ligA)
03430 Mismatch repair
RMB_02430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmi03032
]
RMB_02430 (ligA)
03400 DNA repair and recombination proteins [BR:
rmi03400
]
RMB_02430 (ligA)
Enzymes [BR:
rmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RMB_02430 (ligA)
DNA replication proteins [BR:
rmi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RMB_02430 (ligA)
DNA repair and recombination proteins [BR:
rmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RMB_02430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RMB_02430 (ligA)
MMR (mismatch excision repair)
DNA ligase
RMB_02430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RMB_02430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
TLN1-like_RS
Motif
Other DBs
NCBI-ProteinID:
AFB31360
UniProt:
H6QI60
LinkDB
All DBs
Position
434526..436595
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEKEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPIFC
EPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEELFAFYEYLKTNREDLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGQTQLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTATFDTPLFCLSCNSKL
HYMPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVANLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
REVGSYNNFIAQMELLSTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVTAGVSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaaaaggaagcgcaaaaattactagaagaactcgct
gataaaatagcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaagtgcctatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgtataaaaaatttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaaaacggggtgcttacaacg
ggagctacaagaggtgacggatatgtcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccggagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgatgcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctt
gcttcttcacaagatcaattacttacaaaattaaaagaatgcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaacttttcgccttttacgaatatctcaaaaca
aatagagaagatttaccttatgaaattgatggagtagtatataaactaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtccacgctttgctaccgctcataaattt
cctgcaataataggacaaacacagttactttctattactgtacaggtcggtagaactggt
acgttaacgccggtagccgaacttgaacccatagaaataggcggggtaactgttagcaga
gcaacattacataatttccaagaaattgcacgaaaagatgtgcggattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatacagcaacgtttgatactcctttattttgtctgtcatgtaattctaagttg
cattatatgcctgaagatattattatacgctgtgataatggccttaactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgaatttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagcaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaagttggcagctataataattttatagctcaaatggaattgcttagcacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacggacaagatagta
gtatttaccggtagtttaccgactatatctagagcggaagctaaagcaacggccgagaaa
cttggggctaaagttacagctggcgtatcatcgaacacggatttagttgtagccggtgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa
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