Rhodoferax mekongensis: RAN89_05540
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Entry
RAN89_05540 CDS
T10170
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
rmk Rhodoferax mekongensis
Pathway
rmk00300
Lysine biosynthesis
rmk00550
Peptidoglycan biosynthesis
rmk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RAN89_05540
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RAN89_05540
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rmk01011
]
RAN89_05540
Enzymes [BR:
rmk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
RAN89_05540
Peptidoglycan biosynthesis and degradation proteins [BR:
rmk01011
]
Precursor biosynthesis
Amino acid ligase
RAN89_05540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
WNO05890
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Position
1166446..1167945
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AA seq
499 aa
AA seq
DB search
MATFTTPVQAVEWLRSCGVQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALAC
LAEQSGAEAFELDSDRTGFYSGLKAGSGPIAAAFYGMPSRELAVMAVTGTNGKTSTAWWL
AQALAQVGGKEAMPCGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRAFVQQGLKACAME
ASSIGIEELRMTGTVIHTAIFTNFTQDHLDYHGSMAAYWAAKRALFSWDGLKAAVVNVDD
DKGAELAAELADTSLNVWTVAVQGDARLMARSITHSAQGLAFDVVEGGETVRLQSHVIGS
YNVSNLLGVIAAMRTVGIPLQSAVQACATLLPVPGRMECIGGESAPLVAVDYAHTPDALA
QALRALQPVAQARGGKLWCVFGCGGDRDASKRPLMGAVAAAQSEHTVVTSDNPRSEKPEA
IVAQILLGMVECPHVDVQVDRAVAIADAICSADAQDVILLAGKGHEETQEIAGVKTPFSD
MAHARAALALRSPNEETMR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggccaccttcaccacccccgtgcaggccgtggaatggctgcgctcctgcggcgttcag
ggccttacgacagacagtcgcgaagccaccagcgtggatgcattcattgcctggccgggt
gccgcgaccgatccacggcgctttgttgcgcccgcactggcgaaaggcgctctcgcctgc
ctcgcggagcagtcgggtgcagaggctttcgaattggattccgatcgcacgggcttttac
tccggactcaaggccggttccgggccgatagcagcagcgttttacggcatgccttcccgc
gagttggccgtgatggcggtgaccggcaccaacggaaaaaccagtacggcctggtggctc
gcccaagcattggcccaagtggggggcaaagaggctatgccgtgtggcgtcattggcacg
ctgggcgttggtcgcccgcctgcattgaaggccactggcttcacgacgccagatccggtt
ctcttgcagaagaccctgcgcgctttcgtccagcaagggctcaaggcatgcgcgatggag
gcttcatccatcggcattgaagagctgcgcatgaccggcacggtcatccacaccgccatc
ttcaccaatttcacgcaagaccatctggactaccacggcagcatggcggcttactgggcc
gccaagcgagcgctgttctcttgggatggattgaaggccgctgtggtgaatgtggatgac
gacaagggcgccgaattggcggcagagcttgcggatacttccctgaatgtatggacagtc
gccgtgcaaggtgacgcgcgcttgatggctcgcagcatcacccattcggcgcaaggcctg
gcattcgatgtcgtggaaggcggagagactgtccgtctgcagtcgcacgttatcggtagc
tacaacgtgtccaacttgttgggggtgattgcagccatgcgcacggtgggcatccccctg
cagtctgcggtgcaagcctgcgcaaccctgttgccggtaccgggtcgtatggagtgcata
ggcggagagtctgctcccctggtggcggtggactatgcccatacgccggatgccctggcg
caagccttgcgcgcattgcagccggtggcccaagcccgcggaggaaaactctggtgcgtg
ttcggttgcgggggtgaccgcgatgcgtccaagcgccccctgatgggagccgtcgccgca
gcccagtcggaacatacggtcgtgaccagcgacaaccctcgcagcgaaaagccggaagcc
atcgtggcgcaaattctcttgggcatggtggagtgcccccatgtggatgtgcaggtggat
cgcgccgtggcgattgccgacgccatctgcagcgccgatgcacaagacgtcattctgctg
gccggcaaaggtcatgaagaaacccaggaaatcgccggtgtgaaaaccccgttctccgac
atggcgcacgcccgggccgctctggccttgcgcagtcccaatgaggagaccatgcgatga
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