Rhodoferax mekongensis: RAN89_12280
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Entry
RAN89_12280 CDS
T10170
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmk Rhodoferax mekongensis
Pathway
rmk03030
DNA replication
rmk03410
Base excision repair
rmk03420
Nucleotide excision repair
rmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RAN89_12280 (ligA)
03410 Base excision repair
RAN89_12280 (ligA)
03420 Nucleotide excision repair
RAN89_12280 (ligA)
03430 Mismatch repair
RAN89_12280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmk03032
]
RAN89_12280 (ligA)
03400 DNA repair and recombination proteins [BR:
rmk03400
]
RAN89_12280 (ligA)
Enzymes [BR:
rmk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RAN89_12280 (ligA)
DNA replication proteins [BR:
rmk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RAN89_12280 (ligA)
DNA repair and recombination proteins [BR:
rmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RAN89_12280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RAN89_12280 (ligA)
MMR (mismatch excision repair)
DNA ligase
RAN89_12280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RAN89_12280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WNO03693
LinkDB
All DBs
Position
complement(2563031..2565121)
Genome browser
AA seq
696 aa
AA seq
DB search
MATLDLFSSEPAAPDSSFHERLLYLREELHRLGHAYYVLDAPLVPDAEYDRLFQELQELE
AAHPEWVTPDSPTQRVGGQVLDAFTSVRHAVPMLSIRTETDTESTGALAFDTRVRKELEL
SESDAPVEYVAELKFDGLAMNLRYEQGVLVQAATRGDGEYGEDVTQNIRTIGQIPLRLPA
GVPAVLEVRGEVYMRRDDFEALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAA
QRPLSFFAYGLGEVTPASEGGPVFGTHYAMLQTLKSWGFPVAAQVKIARGAPELIAYHQR
IGVGRDSLPFDIDGVVYKVNSLALQQRLGFVTREPRWAVAHKYPAQEQLTTVLAIDVQVG
RTGKLTPVAKLAPVFVGGVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVLL
EKRAGEAPPFTMPRICPVCQSAAVREEGEADYRCTGGLFCSAQRKQAILHFAQRRAVEVE
GLGDKLVEQLVDANVIRNLPDLYRLGLSALASLDRMADKSAQNIVDALEKSKQTTLPRFL
FGLGIRHVGEATAKELARHFGTLDAIMDADEEALLAVSDVGPIVAQSIRTFFDQAHNREV
VEQLRACGVTWPEGAPADAGPKPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSVSK
KTHYVVAGAEAGSKLDKANELGVPVLDEAGLLELLK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgctggacttgttttcatccgagccggcagcgccggactctagctttcacgaa
cgcctgctttacctgcgggaagaattgcaccgcctcggccatgcctactacgtgctggat
gcgcctttggtgcccgatgctgaatatgaccggctgtttcaggagctccaggagttggag
gccgctcatcctgagtgggtgacacctgactccccgacgcaacgggttggcgggcaagtg
ctggatgccttcaccagcgtgcgccacgcggtgcccatgctcagcatacgcaccgaaacc
gacaccgaatccaccggcgcactcgcattcgatacccgcgtccgcaaagagctggagctg
agcgagagtgacgctccggtggagtacgtcgctgagctgaagtttgacggcttggcgatg
aacctgcgctacgagcagggcgtgctggtgcaagcggccacacggggcgacggtgaatat
ggcgaagacgtgacccagaacatacgcaccatcggccagattcccttaaggctgccagcg
ggcgtgcctgccgttctggaggtgcgcggtgaggtctatatgcgccgcgatgatttcgag
gccttgaatgaacgccagcgcgcgcgtattgccgcaggcgagaagggtgaaaaaaccttt
gtgaacccgcgcaacgcggcggcaggcgctgtgcggcagctggacccgggcattgcagcc
cagcggcccctgagcttctttgcttacggactgggggaagtcactccggccagcgagggc
gggcccgtgttcggcacccactacgccatgctccagacccttaaatcatggggttttccg
gttgcagcgcaggtgaaaattgcgcgaggcgctcctgaattgatagcgtatcaccagcgt
attggagtgggccgcgatagcttgccattcgatattgacggcgtcgtctacaaggtaaat
agtctagccttacagcaaaggctgggctttgtcacgagagagccgcgctgggctgtggcc
cacaagtacccggcacaagagcaacttaccaccgtgctcgctattgatgtgcaagtgggg
cgcaccggcaaattgacgccagtggccaagttggctccggtctttgtgggtggcgtcacc
gttaccaatgctaccttgcacaatgaggacgaggcccgccgcaaagacgtgcgggtgggc
gataccgtcatcgtgcgccgtgcgggagatgtgattcctgaggttgtctctgtcctgctg
gaaaaacgagctggtgaggcccccccgttcaccatgcctcgcatttgcccggtgtgccag
tccgctgcggtgcgggaggagggcgaggccgactaccgctgcaccggtggcctgttttgc
agtgcccagcgcaagcaagccatcctccattttgcgcaacgccgcgccgtcgaggtggaa
ggcctgggcgacaaactcgttgagcaactggtggatgcgaacgtgatccgcaatctgcca
gacctctaccgcttgggcttgagcgctttggccagcctcgaccgcatggccgacaagtca
gcacaaaacatcgtggatgcgttggaaaagtccaaacaaaccaccttgccacgcttcttg
ttcgggctgggtatccgccacgtgggcgaagccacggccaaggaactcgcccgccatttc
ggcacgctggacgccataatggatgcggatgaggaagcactgttggccgtgtctgacgtg
ggtcccatcgtcgcccaaagcattcgcacctttttcgaccaagcccacaaccgggaagtg
gtggagcaattgcgtgcgtgcggcgtcacctggcccgaaggtgcccctgcggatgccggc
cccaaacctttggctggcaaaacgctggtgctcaccggtaccttgcccaccttggggcgg
gatgcagccaaagacctcattgaggccgctggtggcaaggtcagcggctctgtgagcaag
aaaacgcactacgtggtcgcaggagcagaagccggcagcaaactggacaaagccaatgag
ctgggtgttcccgtgttggatgaagcaggcctcttggagttgctgaaatga
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