KEGG   Ralstonia mannitolilytica: TK49_11125
Entry
TK49_11125        CDS       T03778                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rmn  Ralstonia mannitolilytica
Pathway
rmn03030  DNA replication
rmn03410  Base excision repair
rmn03420  Nucleotide excision repair
rmn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rmn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TK49_11125
   03410 Base excision repair
    TK49_11125
   03420 Nucleotide excision repair
    TK49_11125
   03430 Mismatch repair
    TK49_11125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rmn03032]
    TK49_11125
   03400 DNA repair and recombination proteins [BR:rmn03400]
    TK49_11125
Enzymes [BR:rmn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TK49_11125
DNA replication proteins [BR:rmn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TK49_11125
DNA repair and recombination proteins [BR:rmn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TK49_11125
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TK49_11125
   MMR (mismatch excision repair)
    DNA ligase
     TK49_11125
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TK49_11125
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia BRCT_2 HHH DUF4796_N
Other DBs
NCBI-ProteinID: AJW45205
LinkDB
Position
1:2335620..2338058
AA seq 812 aa
MSKTAEPASGATPEARAAWLRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPE
LRTPDSPTLRVGGAILPEFAPVRHVVPMLSIRTETDTTANGARAFDASVRRELGLDASDP
PVEYAAELKFDGLAISLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSAVGGVV
PEVLEVRGEVYMRRDDFEKLNARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA
YGLGEVAGWKDMPDTHSGVLDALQDFGFPVSKERAAVKGGEGLVEFHAAIGAKRDSLPFD
IDGVVYKVNALALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARL
VPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLERRPMEDVPGT
DLFNAEQRAKYPPFELPKTCPVCGSHVVREAGEAVARCSGGLFCSAQRKEAIRHFAGRRM
MDIEGLGERYIDNLVELDYVHGIADLYKLTLDDFLEMKRRADERDGVTPETVAAGKIATK
WAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLDVIRRAPAPLLLALPD
VGGTVAEAIADFFAESKNQQALDALLEAGVSPQGEHAPNPKLRDKLEAAALYATLGVPKL
TATRARQLAAAVPTLGQLASADAGQLAGLPADVSASLLEWLDAHDHRAQLARLDALREEL
LAAMPAEAAEEGVLSGKTVVLTGTLPNLTREEAKAMLEAAGAKVSGSVSKKTDYVVAGEE
AGSKLAKAEELGVKVLNEAGMLALLNNPGDEA
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgagcaagaccgcagaacccgcgtccggagcgacacccgaggcgcgggcggcctggctg
cgcgccacgctgaaccggtacgcccacgagtactacgtgctcgatcagccgagcgtgccg
gacgccgaatacgaccggctctaccgcgaactggaggcgctggaagccgaacatcccgaa
ctgaggacgccggactcgcccacgctgcgcgtcggcggggcgatcctgcccgagttcgca
ccggtgcgacacgtggtgccgatgctgtcgatccgcaccgaaacggataccacggccaat
ggtgcccgcgcgttcgatgccagcgtgcgccgtgaactgggcctcgatgcatccgacccg
cccgtcgaatacgccgccgagctgaagtttgacggcctcgccatcagcctgcgctacgag
cgcggctacctggtgcaggccgccacgcgcggcgacggcaccacgggggaagacgtcacg
cagaacatccgcacgatccgccagattccgctcggcctttccgccgttggcggcgtggtg
ccggaggtgctggaagtgcgcggcgaggtctacatgcgccgcgacgacttcgaaaagctc
aacgcccgccagcgcgagcgcggcgagaagaccttcgtcaacccgcgcaataccgcagca
ggggccgtgcggcagctcgacccgaagatggctgcggagcgcccgctgtcgttcttcgcc
tatggcctgggcgaagtggccggctggaaggacatgcccgacacgcattccggcgtgctc
gacgcgctgcaggatttcggctttcccgtcagcaaggagcgcgcggccgtgaagggcggc
gaagggctggtggagtttcacgccgccattggcgccaagcgggacagcctgccgttcgac
atcgacggtgtggtctacaaggtcaacgcgctcgcgctgcagcgtgaactgggcttccgc
acacgcgagccgcgctgggcggtggcgcacaagtatccggcgcaggaggcgctgaccacg
gtggagtcgatcggcgtgcaggtcggccgcacgggcgccatcacgccggtggcgcgcctt
gtgccggtgttcgtcggcggcgtgacggtgaccaacgcgacgctgcacaacgaagacgaa
gtccgccgcaaggatgtgcgcgtgggcgacaccgtgatcgtgcgccgcgccggcgacgtc
atccccgaagtggtgagcgtggtgctcgagcgccgcccgatggaagatgtgccgggcacg
gacctgttcaacgcggaacagcgcgccaagtatccgccgttcgagctgccgaagacgtgt
ccggtgtgcggctcgcacgtggtgcgcgaagcgggcgaagcggtggcgcgctgctcgggc
ggcctgttctgctcggcgcagcgcaaggaggccatccgccattttgccggccgccgcatg
atggacatcgaaggcctgggcgagcgctacatcgacaacctcgtcgagctcgactacgta
cacggcattgccgacctgtacaagctcacgctcgacgatttcctcgaaatgaagcgccgc
gccgacgagcgcgatggtgtcacgcccgagaccgtcgccgccggcaagatcgccaccaaa
tgggctgagaacctgctcgaaggcatccaggccagcaagacgccgccgctggcgcgcttc
ctgtttgcgctcggcattcgccacgtgggcgaatcgaccgccaagaccctcgccgactgg
ctcggcagcctggacgtgatccgccgcgcgccggcgccgctgctgcttgcgctgcccgac
gtgggcggcaccgtggccgaggccatcgccgatttctttgccgagtcgaagaaccagcag
gccctggatgcactgctggaggcgggcgtatcgccgcagggtgaacatgcgcccaacccc
aagctgcgcgacaagctcgaagcggcagcgctgtacgccacgctcggcgtgcccaagctg
acggccacccgcgccaggcaactggccgcggccgtgccgacactggggcaactcgcaagc
gctgatgcggggcaactcgccggtctgccggcggacgtgtccgcatcgctgctcgaatgg
ctggacgcacacgaccatcgcgcgcagttggccaggctcgatgcgctgcgcgaagagctg
cttgccgccatgccggccgaggccgccgaggagggcgtgctctccggcaagactgtcgtg
ctgacgggtacgctgcccaacctgacgcgcgaagaagccaaggccatgctcgaggccgca
ggggccaaggtctcgggttcggtgtcgaagaaaaccgactacgtggtcgccggtgaagag
gccggcagcaagctcgccaaggccgaagagctcggcgtgaaggttctgaacgaagcgggt
atgctggcgctgttgaacaatccgggagacgaggcgtga

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