Rickettsia montanensis: MCI_02770
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Entry
MCI_02770 CDS
T01784
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmo
Rickettsia montanensis
Pathway
rmo03030
DNA replication
rmo03410
Base excision repair
rmo03420
Nucleotide excision repair
rmo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCI_02770 (ligA)
03410 Base excision repair
MCI_02770 (ligA)
03420 Nucleotide excision repair
MCI_02770 (ligA)
03430 Mismatch repair
MCI_02770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmo03032
]
MCI_02770 (ligA)
03400 DNA repair and recombination proteins [BR:
rmo03400
]
MCI_02770 (ligA)
Enzymes [BR:
rmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCI_02770 (ligA)
DNA replication proteins [BR:
rmo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCI_02770 (ligA)
DNA repair and recombination proteins [BR:
rmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCI_02770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCI_02770 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCI_02770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCI_02770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
TLN1-like_RS
Motif
Other DBs
NCBI-ProteinID:
AFC73447
UniProt:
H8KCI9
LinkDB
All DBs
Position
complement(479599..481668)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIVNKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFAPIFC
EPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPYKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGRTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPSDTATFDTPLFCLSCNSKL
HYMPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQIEFLIDNGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRRIGEQNAKLLA
KEFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGAI
LNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAAGVSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaagaggaagcacaaaaattactagaagaactcgct
gataaaatagcagcgtacaaccatgcttattatatagaagataatcctttagtttctgat
agcgaatatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagtaaataaatttgctaaa
gttacgcatcaagtgcctatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgtataaaaaatttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaaaacggggtgcttacaacg
ggagctacaagaggtgacggatatgtcggtgaagatataacagcaaatattaaaacaatc
aaaaattttccttataaaatagataatgtcccggagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgattcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctc
gcttcttcacaagatcaattacttacaaaattaaaagaatgcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaaattttcgccttttacgaatatctcaaaaca
aatagagaaaatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtccacgctttgctaccgcgcataaattt
cctgcaataataggacgaacaaagttactttctattactgtacaggtcggtagaactggt
acgttaacgccggtagccgaacttgaacccatagaaataggtggggtaactgttagcaga
gcaacattacataatttccaagaaattgcacgaaaagatgtacggattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctagtgatacagcaacgtttgatactcctttattttgtctgtcatgcaattctaagtta
cattatatgcctgaagatattattatacgctgtgataatggccttaactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaaattgagtttttaatagataatggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcgtatcggtgaacaaaatgctaaattacttgct
aaagaatttggcagctataataattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgcaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacggacaagatagta
gtatttaccggtagtttaccaacgatatctagagcggaagctaaagcaacggctgagaag
cttggggctaaagttgcagctggcgtatcatcgaacacggatttagttgtagccggcgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa
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