Rhipicephalus microplus (southern cattle tick): 119175053
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Entry
119175053 CDS
T07403
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rmp03036
]
119175053
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119175053
Chromosome and associated proteins [BR:
rmp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
119175053
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119175053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
DUF6970
Motif
Other DBs
NCBI-GeneID:
119175053
NCBI-ProteinID:
XP_037282129
LinkDB
All DBs
Position
7:167160650..167429339
Genome browser
AA seq
2015 aa
AA seq
DB search
MAAANKQFFVYDRRKSNTPESVVAVGPKDDYLDLRTRIMKHYGIASSEPFVICTTNREEI
SKATYDKLEGGETLYVLKNIDQELTGQTFQKVEYLPHYDTIIKSGMYEYYASEGQNPLPY
AFAELIDNSLAATKNNVGSRKIELKLYLDDSSQQERSTILVLDNGCGMTSWQLNNWAIYR
LSKFIRKDKALQLVEDGNSDEGAQHKPRFLNSEISYFGAGGKQAIFFIGNSTRMITKPKG
SKDVHELVISKDEFERREKEKGLIYSGNILNRKPGDASHVSIEEEGLQEIIADEVNKEQF
TCVVIWGISSEHVQFLKHNFSTWCSQLAHIYHYYLHGPNGNVAPDEASRAPSPYRHIDIE
VSLIMKSGQHRVANLRDIDTDPETLLIRSTSDQFDFKATVDGTRVVEGQLRYHPFLYDHE
SYPSEHSDHRDGDDEDELMANGVKPARGQRPIFECFWNGRLIPYTTIEEFDWCSPPKKTR
NIPIECFNRISGVLWTDDAFQVSTNKLTFMDLENKLREKNTIFARVVNGQVVRASIEKHF
FEWLQSCHEHSDKQIMFESYQETISRRDTQKYKQYPWAVFNAIEWDGKHFKKGQLIRTQR
TNPIIIGSIRRFLLYGDYSESVCATGGEVEIQQEPRSLYDEVKIFPLAKLDRKVTDSMLQ
KIIDEEEGRLPSKLYVTWPEGDQLYPNEKRPAGKAIGDIKVEIQNKKGENVSKLPGAQNK
RLSVEMKIVWHSASGDKVVAQYVSPHNKNWGYWFRRMENIQNLGAHTLTLQAMLSDSTTA
MTSGKELPSFKIRFTVTEAAPDKFNVGYLEGPFRVGTPFQIPLDFLDKYGNSTKPSPDLR
PELKANGLELSYDSVQAKGNTLIIKGIVAKGIVESNSGKSFNLTVKIPGLEENTQTLKIR
LLPGPAYELQVLPASEDQLSFENGATPSFDLSVLDMAGNYTCEPKFVVICKFQAPRQTGL
PVYTVDLSNSCKGTITGPPLTLRQVQKEEKVTAKFEVQNYKNIAHVERVLTLLPSHQAAA
LRLSCTGEDGKEMEIENGRDLPWVAGETLTGLRFEVRDEIGKPITLTSSLVSKLKLNWAS
DIPKDQVLAGRLPDIICPSSVKQSLFCHMSINSGRAVDFSFTVKPKNGEPAILKVSCKGT
TDVRIGEVHQSDILISLTDKYQNPIKKLQHKDLAELLIIAEGMNYDDVMKSLDQNCGFHV
KGLKFMDSSLGCKEVCFQWRKLKDYLRLNIVPGPPASLAYTNYNPAEPVTVTSEGKIPKP
LVVQLQDARGNPSLESNIKIILGTDEAIKAIPPQQPVKTDSKGKASFGILTLALKTPVAP
KPCEFNICSTNCRGLFTLGTKATIGRTIINGPVLKLHLTCDPEKPVELNVDYKGKKTYTV
ADELPETTVHVVAEDGNVMCSVLGKQLSMKLTRIDCAPKNHQKVFTVAPAENTSSNGFYH
FRKVRVPEKSGEYNMQFHFNNGKHAISSAIISLTVVPDIPVKLAPQQDPVIPSVSNQSKS
SCRNLLKYLKLDLTDRFGNSTAMNMTGVLTLQVISPDPSVKEVPHFEGNVNQYQVPISKG
CAVVQNLQIQENTEGVDGFQYILRFTPKLHKTALPNYEVPFLFYNDASKQEEMAKLTKKR
TDLLKQLQTFEDLFQTTENIYTELEAVIRDAQAEESKYRGELRRIGFNSNFIKDEQQVGP
ALKICESQKQALDNKNRRVYVPPPYPDEPGVLGKVGHLAWVEEDDVSAVLSWHMRGDIDV
VVTETMDKAKDIYRKTNGKQQVIALDSIFKRNTAKALPHLRNKSFTPTGNPKFALDYFIF
RKDPEVCRTVFANFIGETIVLDSLDDATKYRTEVTKFCACPTLLAKTGERIASTGKFGGH
QNRAPPIGQLQGNVFGEPPTKDLDIVQDQIQLLKKLSGAMKKQRDARTELEKQKQKDTTF
VMKKNDYEQLKKELAVVDEGIASLQGSGQHDDRPVQDLVRNSPRLQSLPAVPISRYPPAS
PRTPSDGSTNGVSRRARIPPAPATAPVERKRRRIT
NT seq
6048 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagcaaataaacagttttttgtttacgaccgccggaaaagcaatacaccagaa
tctgtggttgccgtggggccaaaggatgactacctggatctaaggacacggataatgaag
cactatgggattgcctcctcggagccattcgttatctgcacaacaaacagggaagagatt
agcaaggctacttacgacaaacttgaagggggcgagaccttgtacgtgcttaagaacatt
gaccaagagctcacaggacaaacgtttcagaaggtggagtacttgccacattatgacacc
atcatcaaatctggcatgtatgaatactatgcttctgaaggacagaatccactgccatac
gcatttgcagagctcattgacaattccctggcagccacgaaaaacaatgttggtagccgg
aaaattgagctgaagctgtacctggacgacagctcgcagcaggagaggagcaccatcctt
gtactggacaatggctgtggcatgacctcctggcagctcaacaactgggccatctaccgg
ctgtccaaattcattcgcaaggacaaggcactgcagcttgtagaagacggtaactctgat
gaaggggctcagcacaagcctcggtttctcaacagtgagatctcttactttggagctggt
ggcaaacaagctattttcttcattggcaactcaacgaggatgataacaaagccgaaaggt
tccaaagatgttcatgagctagtcatctccaaggatgagtttgagcggcgtgagaaagaa
aaagggctcatctactctggcaacatactgaacagaaagcctggagatgcgagtcacgtc
agcatagaagaggaagggctgcaggaaatcatagcagatgaagtcaacaaagagcagttc
acctgtgtggtcatctggggcatctctagtgaacatgttcagtttctgaaacacaacttc
agcacttggtgttctcagctggcgcatatttatcactattacttgcatggtccaaatgga
aatgttgccccagatgaggctagccgcgcaccatctccataccggcacatcgacatagag
gtgagcctaatcatgaagagcgggcaacacagggtggccaacttgcgagacattgacact
gatccggagacgctgttgattcgtagcacatctgaccagtttgacttcaaggctactgta
gatggcacccgagtggtggaaggacagctgcgttatcacccctttctttacgatcatgag
agctatccatcagagcacagtgaccacagagatggtgacgatgaagatgagcttatggcc
aacggtgtcaagccagcccgaggtcagcgacctatctttgagtgcttctggaatggcaga
ctcatcccatacaccacaattgaggagttcgactggtgcagccctcccaagaagacaaga
aacattcccattgaatgcttcaacaggatttcgggtgtcctctggacagatgatgcattc
caagtaagcaccaacaagctcactttcatggatctggaaaacaagctgcgggaaaagaac
accatatttgcccgcgttgtcaatggccaggtggtgcgtgccagcatcgagaaacacttt
ttcgagtggctgcagtcgtgtcacgagcacagtgacaagcagatcatgtttgagtcttac
caagagacaatcagccgaagggacactcaaaagtacaagcagtacccctgggccgtcttc
aatgccattgagtgggatggcaagcactttaagaaaggacagctgatcaggacacagcga
acaaacccaatcatcattggctcaattcgaaggttccttttatatggtgactactccgag
agtgtctgcgcgacaggaggggaggtggagatacagcaggagccgagatcactctatgat
gaggtgaagatcttcccactagcaaagttggatcgcaaggtcaccgattccatgctgcag
aagataattgatgaagaagaaggaaggttgccctcaaagctctacgttacatggcctgag
ggagatcagctctacccgaatgagaagcggccagctggaaaggccataggtgacatcaag
gtggaaattcagaacaaaaagggggagaatgtcagcaagttacctggagctcagaacaag
cgtctttctgtggaaatgaagattgtctggcactctgcatctggtgataaggtggtcgcg
cagtacgtctctcctcacaacaagaattggggctattggtttcgcaggatggagaacatt
cagaatttgggggcccacacactcacccttcaagccatgttaagcgactctaccacagct
atgacatctggcaaggagttgccatcgtttaagattcggttcacagtgacagaggctgca
ccggacaagttcaatgtgggttacttggagggcccatttcgtgttggcacacccttccag
atcccgctggactttcttgataagtatggcaactcaaccaagccatctccagacctcaga
ccagagctcaaggccaatggcctggaattatcctatgacagtgtccaagccaaaggcaac
acactgataatcaagggaattgtggccaaggggattgttgagtcaaactcgggaaagagc
ttcaacctgacggtgaaaattcccggccttgaggagaacacgcagaccctcaagattcgc
ttacttcctgggccagcctatgaactgcaggttcttcctgcaagtgaagaccagctgtca
tttgaaaatggtgctacgccatctttcgacttgtctgtgcttgatatggcaggaaactat
acctgtgaacccaagtttgttgtgatttgcaagtttcaggcacctcgtcagacaggcctg
cccgtctacacagtggatctatcaaatagctgcaaaggcaccatcacaggccctcctctc
accttgcgccaagtacagaaggaagagaaagtcactgccaagtttgaagtccagaactat
aagaacatagcacatgtggagagagtgctgacactgctgcccagtcaccaggcagctgct
ctgcgcctttcttgcactggagaagatgggaaggaaatggaaatagaaaatggccgagac
cttccgtgggtggcaggggagacactcacggggctcagatttgaggtgcgtgatgaaata
gggaagcccataactctgaccagcagtctcgtctccaagctcaaacttaactgggcatcc
gacatcccaaaggaccaagtcctggcaggccgcctgccagacattatttgcccatcatct
gtgaagcagtctcttttctgccacatgtccatcaactctggtcgtgccgtggacttttct
tttactgtgaagccaaagaatggtgaacctgccatcctgaaagtgtcatgcaaagggacg
acggatgtacggatcggtgaagtccaccagtcggacattctcatcagtctcactgacaag
taccagaatccaatcaaaaagctgcagcataaggaccttgctgagcttctcatcatagct
gagggcatgaactatgacgatgtaatgaagtccttagaccagaattgtggctttcacgtg
aaaggcctcaagttcatggacagcagcctggggtgcaaggaagtgtgtttccagtggcga
aagctcaaagactacctgcggctaaatattgttcctggtccaccagccagcctcgcttac
acaaactacaaccctgcagagcctgtgacagtgacatcggaaggaaagatccccaagccc
ttggtggtacagcttcaggatgccagaggcaatccttccttggagtccaacatcaagatc
atcctgggcaccgacgaggctatcaaggcgatacctcctcagcaaccagtgaagacggac
tccaaaggaaaggcttccttcggcattctcacgcttgccctcaagactccagtcgctcct
aagccgtgcgagttcaacatctgttccaccaactgccgaggtctcttcacgcttggcaca
aaggctaccatcggcaggactatcatcaatggccctgtgctgaaactgcacttgacttgt
gacccagaaaagccagtggagctcaacgtggactacaaagggaaaaagacctacactgtg
gctgatgaattgccagagacaactgtgcacgtggtcgcagaagatggcaacgtcatgtgc
tctgtcctgggtaaacaattgagcatgaagttgactcgtatagactgtgccccgaagaac
caccaaaaggtattcacagtagctccagctgaaaacacatcttccaatggcttttaccac
ttcaggaaagtgagggttccagaaaagtctggagaatataacatgcagttccacttcaac
aatggcaagcatgcaatcagcagtgcaattatatcactaacagttgtgccggatatcccc
gtgaagctggcaccccagcaggaccctgtcataccttctgtttctaaccaatccaaatcc
tcctgtcggaacctgctcaagtacctcaagttggatctcacagaccgatttggcaacagc
acagcgatgaatatgactggcgtgctgacacttcaggtgatctctcctgacccatctgtc
aaggaagtcccgcactttgaaggaaatgtaaaccagtaccaagtgcctatcagcaaagga
tgcgcagtagtgcaaaacctgcagatccaggagaacactgagggagtggatggtttccag
tacatcctgcgatttacgcccaaattgcacaagacggcccttcccaattatgaagtgcct
ttccttttttataacgatgcatcaaaacaagaagagatggcgaaattgactaagaagagg
acagatctgctgaagcagctgcagacttttgaggacctctttcagacaactgagaacatc
tatactgaactcgaagctgtgatccgagatgcccaggcagaagaatccaagtacaggggc
gaattgaggaggattggattcaacagcaatttcatcaaagatgagcaacaagttggtcct
gccctgaagatctgcgaatcgcagaagcaggcgttggacaataagaacaggcgtgtctac
gtgcctccaccctacccagatgagcccggtgtacttggcaaggttggccaccttgcttgg
gtggaagaggatgatgtgtctgctgtcctgtcgtggcacatgagaggagacattgatgtt
gttgtcacggagacgatggacaaggcgaaggatatctaccgcaaaactaatggaaaacag
caggtcatcgctctggactcaatttttaagaggaatacagcgaaggcgttgcctcaccta
aggaacaagtcattcactccaacagggaatccgaagtttgcactagactactttatattt
cggaaggaccctgaagtgtgtcgaactgtgtttgccaacttcattggggagaccatcgtc
ttagactcattggatgatgctaccaagtataggacagaggtgacgaagttctgtgcctgc
ccaaccttgctggccaagacaggtgagcgcattgcaagcacgggtaagtttggtggccac
cagaaccgggcacctcccatcggccagcttcagggcaacgtctttggggagccgcccacg
aaggaccttgacatagtgcaagaccaaattcagctcctgaagaagctaagtggggccatg
aaaaaacagcgagatgcacggacggaactggagaaacaaaagcagaaggacaccactttt
gtgatgaagaagaatgactacgagcaattgaagaaggagctggcagtggtggatgagggc
attgcaagcctccagggttcaggccaacatgatgaccggcctgtgcaagacctcgtgaga
aattcgcctaggctccagtctctgccagctgtaccaatcagcaggtaccctccagcttca
ccaagaacacccagtgacggcagcacgaatggcgtttctcgaagagcacgcattcctccc
gctcctgccactgcacctgtggaaaggaaacgcaggcgcattacgtga
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