Rhipicephalus microplus (southern cattle tick): 119176839
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Entry
119176839 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119176839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119176839
Enzymes [BR:
rmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119176839
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119176839
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119176839
NCBI-ProteinID:
XP_037284089
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All DBs
Position
1:complement(176349672..176354293)
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AA seq
659 aa
AA seq
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MDTSTCPTTVAQKVPFGDLCKLCDKISGKQDRVEKRKLLERFITYWREFHDKLHATNGVQ
AATDDSFFPAMRLLLPHLDRDRPAYGIKEATLAKLYIDVLALGKESPDAQKLLRYRTPHV
AKAEAGDFASVAYLVLRNRCPTKGSLTVAEVNELLDEVSDAHAHGGAEGSRRTRDALCTL
LRRTSAAEQKWLVRMILKEMKMGMSEGSILSCYHPDAQDVFDNSSSLLKVCRELKDPKAR
QHVVQVSLFHAVRPMLAERAEPRSVERLLNHEPFFAETKFDGERLQVHKNGAEFRYFTRR
SHDYSSGFGATADEGSLTQYIVKSFQIHVKSCILDGEVIGYDPRSNHFVSKGSHVDVKSL
TENSSLQPCFSAFDILLLNGQVVTNKPLQERVVLLDQALVEVPGRILISKRQNGSTRDDA
IRLLNQAIEDQEEGIVLKGLSSVYKPNARKAGWLKLKPEYVDNLVSDLDMLILGGYFGEG
RRSGVVSHFLLGVASGNLDDDGMPHTFWSVAKVGSGYSSQELDDLLAKLTSKWKVYNPKK
PPEKLVLAPGHKEKPDLFLEPSDSVVLQIKASELVRSSQFRTGITLRFPRVAAIRHDKPW
QDVLSYSELCELEKAAGGKLATATLGHDEDDGGSPAKKRTHWSHCKGIFRYTLPASRFV
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggatacgtccacatgtccaactactgtcgcccagaaagttcctttcggtgacctctgc
aaactctgcgacaagatatccggaaagcaggacagggtcgagaagcggaaactgctggag
aggttcatcacgtactggcgcgagtttcacgacaaacttcacgccacgaacggggttcaa
gcagcgaccgatgattccttcttccccgcaatgcgacttctcttaccgcacttagatcga
gaccgaccggcctatggaatcaaagaagccaccctggcaaaactttacattgatgtactc
gcacttggcaaggagagtcccgacgctcaaaagttgctgcgctacagaacgccgcatgta
gccaaagcggaggccggagatttcgcgagcgtcgcgtatctagtgctgcgaaaccgctgc
cccacgaaagggtcgctaaccgttgccgaagtcaatgagctattagacgaagtgtctgat
gcgcatgcgcacggaggcgcagaaggcagtcggcgcacgagagatgcgctgtgcacactg
ctgcgccgcacttccgccgcagaacagaagtggctggtgaggatgattctaaaggaaatg
aaaatgggcatgagcgaagggagcatcctgtcctgctatcatcctgatgcacaggatgtt
ttcgacaatagcagcagtctcttgaaagtctgtcgagaactgaaagacccgaaagctcgc
cagcatgtcgttcaggtgtcgctattccacgcggtgcgaccaatgttggcagagcgggca
gagcctcgctctgtggagcgtcttttgaatcacgaaccgttctttgccgaaaccaagttt
gatggtgagcggctgcaggtgcacaagaatggcgcagagttcagatacttcacacgacgc
agtcacgactacagttctggatttggagccactgctgatgaaggatctttgacacagtac
atagtgaagtctttccaaatccatgtgaaaagttgtatcttagatggagaggtaatagga
tatgaccccaggagcaatcattttgtttctaaaggttcgcatgtagatgtaaaaagttta
actgaaaattcgtcattacagccttgcttttcggcctttgacatactcctcttgaatgga
caggtagtcaccaacaagcctcttcaagagagagttgtacttctcgatcaagctttagta
gaagttcccggcagaatactgatctccaaaaggcaaaatggttcaacacgagacgatgcc
attcgccttctaaaccaagcaatcgaggaccaagaagaaggcatcgtcttaaaggggctt
tcctcagtctacaagcctaacgcaagaaaagctggctggctgaaactcaagccagaatat
gtggacaatttggtttcagatctggacatgctcattctcggtggttatttcggagaagga
cgccgcagtggtgttgtgtcgcactttctcttgggagttgccagtgggaatctggacgat
gatggtatgccgcatactttctggtcggtcgcaaaagtgggctcgggatacagctcgcaa
gaactggatgacctacttgccaaactgacatcaaaatggaaagtctataaccccaaaaag
cctccagaaaaattggtacttgccccaggtcacaaagaaaagccagacttgttcctagaa
ccttcagattctgtggtacttcagatcaaagcctcggaacttgttcgcagtagccagttc
aggacaggcataacactgcgatttcctcgtgttgctgccatacgccatgataagccttgg
caggatgtgctgtcatattctgagctttgtgaactagagaaggcagctggtggcaaattg
gccactgctacgctcgggcatgatgaagatgacggtggatcaccagcaaaaaagaggacg
cattggagccactgtaaaggcatctttaggtacacacttccagccagccgatttgtctag
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