Rhodothermus marinus DSM 4252: Rmar_1222 Help Entry Rmar_1222         CDS       T01119                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rmr  Rhodothermus marinus DSM 4252 Pathway rmr03030   DNA replication rmr03410   Base excision repair rmr03420   Nucleotide excision repair rmr03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rmr00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Rmar_1222    03410 Base excision repair     Rmar_1222    03420 Nucleotide excision repair     Rmar_1222    03430 Mismatch repair     Rmar_1222  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rmr03032]     Rmar_1222    03400 DNA repair and recombination proteins [BR:rmr03400]     Rmar_1222 Enzymes [BR:rmr01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Rmar_1222 DNA replication proteins [BR:rmr03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Rmar_1222 DNA repair and recombination proteins [BR:rmr03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Rmar_1222    NER (nucleotide excision repair)     GGR (global genome repair) factors      Rmar_1222    MMR (mismatch excision repair)     DNA ligase      Rmar_1222   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Rmar_1222 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH Nlig-Ia PTCB-BRCT BRCT_2 Auto_anti-p27 zf-C2H2_FBX41 Motif Other DBs NCBI-ProteinID:  ACY48112 UniProt:  D0MI04 LinkDB All DBs Position 1429430..1431568 Genome browser AA seq 712 aa AA seqDB search METHTAPQTAEARLLEATHTLLQTVRQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLD NPLIPDADYDLLMQALRKLEARFPELVTPDSPTQRVGGPPLGRFEKVRHPEPLLSLNNAF GEEDVRVWYERCCRMLAERLGQPVQPAVTAELKIDGLAMALTYENGVLTVGATRGDGIEG ENVTQNVRTIPAIPLRIPVDPAVGPPPTRLEVRGEVYMRKRDFERLNEQLQARGERPFAN PRNAAAGSVRQLNPQVTALRPLSFFAYGIGPVEGAEVPDSQYEVLQWLGRLGFPVNEHAR RFEHLDDVLEYCRYWTEHRDELDYEIDGVVLKIDHRPWQALLGAISNAPRWAVAYKFPAR EAITRLLDIMVSVGRTGVVKPVAVLEPVEVGGVTVSQATLHNEDYVRSRDIRIGDLVVVI RAGDVIPQVVRPVVEARTGNERPWRMPERCPSCGSQLVRLPGEADYYCVASDCPAQFVRL LEHFAGRDAMDIEGMGSQVARQLAESGLVRRLSDLYRLKLEDLLKLEGFAETRARNLLRA IEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELAALEGVGPITAES IANWFRVEDNRRLIEELKELGVNTQRLPEEAPAAESPVRGKTFVLTGALPHLTRKEAEEL IKRAGGRVASSVSRNTDYVVVGENPGSKYDRARQLGIPMLDEDGLLRLLGMK NT seq 2139 nt NT seq  +upstreamnt  +downstreamnt atggagacgcacaccgcaccgcaaaccgccgaagcacgcctgctggaggccacacacacg ctgttgcaaactgtccgacagcgcgacctggaagccatcgaccgcaaggaggccgaggcg ctggcggcccggctccgggaagtgctcaaccaacacgcctaccgctattacgtactggac aacccgctcatcccggacgcggactacgacctgctcatgcaggcgcttcggaagctcgag gcgcgtttcccggagctggtcacgcccgactcacccacgcagcgcgtgggaggaccgccg ctgggacgcttcgaaaaggtgcgccatccggagccgctcctttcgctcaacaacgctttt ggcgaggaagacgtgcgcgtctggtacgagcgctgttgccggatgctggccgagcgactc gggcagccggtgcagccggccgtcaccgccgagctgaagatcgacgggctggccatggcg ctgacgtacgaaaacggcgtgctgaccgtcggtgctacgcgcggtgacgggatcgaaggc gaaaacgtcacgcagaacgtgcgcacgatcccggccatcccgctgcgcatccccgtcgat ccggcggtcggaccaccgccgacgcggctggaagtgcggggcgaggtgtacatgcgcaag cgcgacttcgaacgcctgaacgaacagctccaggcccggggcgagcggcccttcgccaat ccgcgcaatgcggcggccggcagcgtgcgccagctcaacccgcaggtgaccgccttgcgg ccgctgagcttttttgcctacgggatcgggcccgtcgaaggcgccgaggtgcccgacagc cagtacgaggtgctgcaatggctcgggcgcctgggcttcccggtcaacgaacatgcccgc cgcttcgagcacctggacgacgtgctcgaatactgccgctactggaccgagcaccgcgac gagctggactacgagatcgacggggtcgtgctgaagatcgaccaccggccctggcaggcc ctgctgggtgccatctccaatgcgccacgctgggcggtggcctacaaatttccggcccgt gaggccatcacgcgcctgctggacatcatggtcagcgtggggcgcaccggcgtggtcaaa ccggtggccgtgttggagccggtcgaagtcggcggtgtgacggtctcgcaggccacgctg cacaatgaagactacgtgcgcagccgcgacatccggatcggcgatctggtggtggtgatc cgggccggcgacgtgattccgcaggtggtgcgccccgtggtcgaagcgcgtacgggcaac gagcgcccctggcgcatgcccgagcggtgtccgtcgtgcggcagccagctggtgcggctg cccggtgaggccgactattactgtgtggcgtccgactgcccggcgcagttcgtgcggctg ctggagcatttcgccggccgcgacgccatggacatcgaaggcatgggcagccaggtggcc cggcagctggccgagtcgggtctggtgcgacggctttcggacctgtaccggctgaagctg gaagacctgctgaagctcgaaggctttgccgagacgcgcgcgcgcaacctgctccgggcc atcgaagcctcgaagcagcggccgctgagccggctgctcttcggcctgggcatccggcac gtgggcaagacgaccgccgagttgctcgtgcagcgcttcgcgtcgatcgacgagctggcc gcggctacgatcgacgaactggccgcccttgaaggcgtgggaccgatcacggccgaaagc attgcgaactggttccgtgtcgaagacaaccggcgcctgatcgaagagctgaaggaactg ggtgtcaacacgcagcggttgcccgaagaggcaccggcggccgaaagtccggtgcgcggc aagacgttcgtgctgacgggcgctttgccccatctcacgcgcaaggaggccgaggaactg atcaagcgggccggcggtcgcgtggccagcagcgtcagccgcaacacggactacgtcgtc gtgggcgaaaaccctggcagcaagtacgaccgtgcccgccagctcggcatcccgatgctc gacgaagacggcctgctgcggctgctggggatgaaataa

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