Roseomonas marmotae: IAI58_08120
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Entry
IAI58_08120 CDS
T08030
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmt
Roseomonas marmotae
Pathway
rmt03030
DNA replication
rmt03410
Base excision repair
rmt03420
Nucleotide excision repair
rmt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IAI58_08120 (ligA)
03410 Base excision repair
IAI58_08120 (ligA)
03420 Nucleotide excision repair
IAI58_08120 (ligA)
03430 Mismatch repair
IAI58_08120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmt03032
]
IAI58_08120 (ligA)
03400 DNA repair and recombination proteins [BR:
rmt03400
]
IAI58_08120 (ligA)
Enzymes [BR:
rmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IAI58_08120 (ligA)
DNA replication proteins [BR:
rmt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IAI58_08120 (ligA)
DNA repair and recombination proteins [BR:
rmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IAI58_08120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IAI58_08120 (ligA)
MMR (mismatch excision repair)
DNA ligase
IAI58_08120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IAI58_08120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QTI80677
LinkDB
All DBs
Position
complement(1719054..1721201)
Genome browser
AA seq
715 aa
AA seq
DB search
MTRRDTLPEQLTEEEAAAELAALAEEIAQADIAYHQNDAPEITDAEYDALRRRNTAIEAL
FPHLKRADSPSEATPGAAPAAGFAKSRHGTPMLSLDNAFAVADFEEFTRSIRRFLKLSEE
EVLRFVAEPKIDGLSVNLTYEKGVFVRGATRGDGTVGEDITRNLETLPDLPRQLPAPFPE
QIEIRGEVFMTKADFLAFHAEQTRLAEEREQRRERGEKVGPEIRIPANPRNAAAGSLRQL
DPEVTARRPLKLFAYAQGASSTPVAETHWDYLQQLERWGFDVNPLSRRLPDENAAEDFQG
ELAEKRAGLDYDIDGVVYKLDRLDWQTRLGFVGRTPRWAIAWKFPAERATTELLRIDIQV
GRTGALTPRAVMQPVNVGGVMVQHATLHNEDEIARKDVRIGDTVVLQRAGDVIPQIVSVV
LEKRPEDSKPFEFPTTCPACGSHAVRPEGEVVRRCTGGLICPAQTVERLKHFVSRNALDI
EGLGEENIIALHDAGLVKSPADIFRLHEHAATVRQWEGWGKGGKSSKKLDNLLAAIEARR
NPPLERFIFALGIRRIGAQNAKLLARHYHSFANWRARMLAATTIGSEAREELGSIQGIGP
AIATELAEFFAEARNRAALDDLASQVTPQDAESIGGSDSPFAGKVVVFTGTLEQSSRDEA
EAIADRLGAKVTKSVSKKTDFVVVGADAGSKAKKAAELGVRTLTEAEWRQMALLD
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgacccgccgcgacaccctgcccgagcaactcacggaagaggaagccgccgccgaactg
gcggccctggcggaggagatcgcgcaggcggatatcgcctaccaccagaatgacgcgccg
gagatcaccgacgccgaatacgacgcgctgcgccgccgcaacacggcgatcgaggcgctg
ttcccgcatctgaagcgtgccgacagcccgagtgaggccacgcccggcgcggcgcccgcc
gccggcttcgccaagtcccggcacggcacaccgatgctgagcctggacaatgctttcgcc
gtcgccgacttcgaggaattcacccggagcatccgccgcttcctgaagctgagcgaggag
gaggtgctgcgcttcgtggccgagccgaagatcgacgggctctcggtcaacctgacctat
gagaagggcgtcttcgtgcgcggcgcgacgcgcggcgacggcacggtgggcgaggatatc
acccgcaacctggagacgctgccggacctgccgcgccagcttcccgcccccttccctgag
cagatcgagatccgtggcgaggtcttcatgaccaaggcggatttcctggccttccatgcc
gagcagacccgcctggccgaggagcgcgagcagcggcgcgagcgcggcgagaaggtgggg
ccggagatccgcatccccgccaatccgcgcaacgccgccgccggctccctgcggcagttg
gacccggaggtgacggcgcggcggccgctgaagctcttcgcctatgcccagggcgcctcc
agcacgccggtcgcggaaacccattgggattacctgcaacaactggaacgctggggcttc
gacgtgaaccccctctcccgccgcctgccggatgagaatgcggcggaagacttccagggg
gagctggcggagaaacgcgcggggctcgactacgacatcgacggcgtcgtctacaagctg
gaccggctggactggcagacgaggctgggcttcgtcggccgcacgccgcgctgggccatc
gcctggaagtttccggcggaacgcgccaccacggaactgctgcgtatcgacatccaggtg
ggccgcaccggcgcgctgacgccgcgcgcggtgatgcagccggtgaatgtgggcggcgtg
atggtgcagcacgcgaccctgcacaatgaggacgagatcgcccgcaaggatgtgcgcatc
ggcgataccgtggtgctgcaacgtgcgggcgatgtgattccgcagatcgtcagcgtcgtg
ctggagaaacggccggaggacagcaagcctttcgagttcccgaccacctgccccgcctgc
ggcagccatgccgtgcggccggagggcgaggtggtgcgtcgctgcaccggcgggctgatc
tgcccggcgcagacggtggagcggctgaagcactttgtcagccgcaacgcgctggatatc
gaggggctgggcgaggaaaacatcatcgccctgcatgatgcaggtctggtgaaaagccct
gccgatatcttcaggcttcacgaacacgccgccacggtccggcaatgggaaggctggggc
aagggtggcaaaagctccaagaagctggacaacctgctggccgccatcgaggcccgccgc
aacccgccgctggagcgcttcatcttcgccctcggcatccggcgcatcggcgcgcagaac
gccaagctgctggcgcgccactaccacagctttgccaactggcgcgccaggatgctggct
gccaccaccatcggctccgaggcgcgggaggagctgggctccatccagggcatcggcccg
gccatcgcgacagaactggcggaattcttcgcggaagcccggaaccgggcggcgttggat
gacctcgccagccaggtgacgccgcaggatgccgaaagcatcggcggcagcgacagcccc
ttcgccggcaaggtggtggtcttcaccggcacgctcgagcaaagctcgcgcgacgaggcg
gaagccatcgccgaccgcctgggcgccaaggtgacgaagagcgtctcgaagaagaccgat
ttcgtggtggtcggcgccgatgccggctccaaggccaagaaggcggcggaactgggcgtc
aggacgctgacggaagcggaatggcggcagatggcgttgctggactga
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