Rothia mucilaginosa: RMDY18_15290 Help Entry RMDY18_15290      CDS       T01144                                  Name (GenBank) NAD-dependent DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rmu  Rothia mucilaginosa Pathway rmu03030   DNA replication rmu03410   Base excision repair rmu03420   Nucleotide excision repair rmu03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rmu00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     RMDY18_15290    03410 Base excision repair     RMDY18_15290    03420 Nucleotide excision repair     RMDY18_15290    03430 Mismatch repair     RMDY18_15290  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rmu03032]     RMDY18_15290    03400 DNA repair and recombination proteins [BR:rmu03400]     RMDY18_15290 Enzymes [BR:rmu01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      RMDY18_15290 DNA replication proteins [BR:rmu03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      RMDY18_15290 DNA repair and recombination proteins [BR:rmu03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      RMDY18_15290    NER (nucleotide excision repair)     GGR (global genome repair) factors      RMDY18_15290    MMR (mismatch excision repair)     DNA ligase      RMDY18_15290   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       RMDY18_15290 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH DUF3701 BRCT_2 RNA_ligase T7SS_ESX_EspC Motif Other DBs NCBI-ProteinID:  BAI65361 UniProt:  D2NNZ3 LinkDB All DBs Position complement(1712936..1715179) Genome browser AA seq 747 aa AA seqDB search MTENNTTQQTAPAETRAESPAENAAENTAEITEALRAEYAELTDKIRAARRAYYNEDAPF LSDAEYDALYRRLEIIEAEHPHLIANDSPTQEVGGEAIEAFAPVTHLQRMYSLEDVFSFE ELRAWLTKTEESARNLTGSAPQWLTELKIDGLAVNLLYRNGTLVRAATRGDGTTGEDVTH NVRTIASIPQQLTGENHPEEIEIRGEVFISSADFEKLNESMIAAGKNPFANPRNAAAGSL RQKDAAVTASRPLSMYVHGIGSRTGLDIATQYETYDLLASWGLPVSPYSEIADNTEAVFD FINKYGEQRHSLVHEIDGIVIKVNDFATQAQLGYTSRVPRWAVAYKYPPEEVHTKLLDIR VDVGRTGRVTPYGVMEPVFVSGSTVERATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEIV APVVALRDGTEREFVMPSECPSCGSPLAPGKEGDVDLRCTNPRSCPAQLTERVYYAASRG AFDIEALGFEAAKALTSPATPDTPPLTTEAHLFSLNIEDLREVTIEREKKVKGVGTGKME RVPYFYTKPTKARPEPKPTKNTLNLFAELEKAKQQPLWRVLVALSIRHVGPTAARALAAE FGSMQAIREADRERLAAVDGVGTTIADSIIEWFAEDWHAEVVDSWAAAGVRMEDSRDESV ERTLEGLTVVVTGTLNGYTRDGAKEAIISRGGKASGSVSKKTHFVVAGANAGSKLDKAQQ LGLKILDEEGFTALLEGGPEAVESAAE NT seq 2244 nt NT seq  +upstreamnt  +downstreamnt gtgactgagaacaacaccacccagcagactgcccccgccgagactcgagcagagagcccc gcagaaaacgccgcagaaaacactgcggagattaccgaggccctgcgcgccgagtacgcg gaactgaccgataagattcgtgccgcccgccgcgcctactacaacgaggacgcgcccttc ctctctgacgccgagtacgatgcgctctaccgccgtctcgaaatcattgaggcggagcac ccgcacctgatcgcgaacgactcgcccacccaggaagtcggcggtgaagccatcgaggcc ttcgcgcccgtcacccacctgcagcgcatgtactccctcgaggacgtcttctccttcgaa gagctgcgcgcctggctgaccaagaccgaagagagcgcccggaacctcaccggtagcgca ccgcagtggctgaccgagttgaagattgacggcctggcggtgaatctgctctaccgcaac ggtaccctcgtacgcgcggcaacccgcggcgacggcaccaccggcgaagatgtcacccac aatgtgcgcaccattgcgagcatcccgcagcagctgaccggcgagaaccaccccgaggag attgaaatccgcggtgaagtgttcatctcttccgctgattttgagaagctcaacgagtcc atgattgccgcaggtaagaacccctttgcgaacccgcgtaacgccgcggcaggctcgctg cgccagaaggatgcggcggtgaccgcctcgcgcccgctgagcatgtacgtgcacggcatc ggttcgcgcaccggcctggacattgccactcagtacgagacttacgacctgctcgcctcc tggggtctgcccgtgagcccctacagcgaaatcgccgataacactgaggcggtcttcgac ttcattaataagtacggcgagcagcgccactccctggtgcacgaaatcgacggcatcgtc attaaggtcaacgacttcgcgacccaggctcagctgggctacacctcccgcgtgccgcgc tgggcggtcgcgtacaagtacccgcccgaagaggtgcacaccaagctactggacattcgc gtggatgtgggacgcaccggccgcgtgaccccctacggcgtcatggagcccgtgttcgtc tccggctcgaccgtggaacgtgccaccctgcacaaccaggacgtggtcaaggctaagggc gtgctcatcggtgacaccgtggtgctgcgcaaggcaggcgacgtgatccccgagattgtc gcccccgtggttgccctacgtgacggcaccgaacgcgagttcgtcatgcccagcgaatgc ccctcctgcggctcgccccttgcccccggcaaggaaggcgacgtggacctgcgttgcact aaccctcgctcctgcccggcacagctgaccgagcgcgtgtactatgccgcaagccgcggc gccttcgatattgaggcgctcggcttcgaagcagcaaaggcactcaccagcccggcaacc ccggacacccctccgctaaccaccgaggcgcacctgtttagcctcaacattgaggacctg cgcgaggtcaccatcgagcgtgagaagaaggtcaagggtgtgggcaccggaaagatggag cgtgtgccctacttctacaccaagccgaccaaggcacgccccgagccgaagcccacgaag aatacgctgaacctcttcgccgagttggagaaggcaaaacaacagccgctgtggcgcgta ctggttgccctctcgattcgccacgtgggcccgaccgctgcccgcgcgctcgccgcggag ttcggttcgatgcaggcgatccgcgaggctgaccgtgaacgccttgccgctgtggacggt gtgggcaccacgattgccgactcgattattgagtggtttgccgaggactggcacgccgag gtcgtcgactcttgggctgccgccggtgtgcgcatggaagattctcgcgacgagtccgtg gaacgcaccctggagggtctgaccgtggtcgtgaccggcacgctgaacggttacacccgt gacggcgcgaaggaagccattatttctcgcggcggcaaggcatcgggctcggtatcgaag aagacccactttgtggttgctggcgcgaacgctggctcgaagctggataaggctcagcag ctgggtctgaagattctggatgaggagggcttcaccgctctgctcgagggtggcccggag gcggtcgagagcgccgcggagtag

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