Roseomonas mucosa: FOB66_15025
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Entry
FOB66_15025 CDS
T06208
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rmuc
Roseomonas mucosa
Pathway
rmuc03030
DNA replication
rmuc03410
Base excision repair
rmuc03420
Nucleotide excision repair
rmuc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOB66_15025 (ligA)
03410 Base excision repair
FOB66_15025 (ligA)
03420 Nucleotide excision repair
FOB66_15025 (ligA)
03430 Mismatch repair
FOB66_15025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmuc03032
]
FOB66_15025 (ligA)
03400 DNA repair and recombination proteins [BR:
rmuc03400
]
FOB66_15025 (ligA)
Enzymes [BR:
rmuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOB66_15025 (ligA)
DNA replication proteins [BR:
rmuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOB66_15025 (ligA)
DNA repair and recombination proteins [BR:
rmuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOB66_15025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOB66_15025 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOB66_15025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOB66_15025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QET93985
LinkDB
All DBs
Position
4:2532430..2534580
Genome browser
AA seq
716 aa
AA seq
DB search
MSDRTESRPVESLNEEEARAELARLAGQIAEADLAYHQQDAPIMSDAAYDALRRRNTAIE
ERFPALKREDSPNEAPPGAPPAAGFSKSRHGTPMLSLDNVFGPEEFAEFAARIRRFLGLS
AEEVLRFVGEPKIDGLSVNLLYEDGRFVRGATRGDGMVGEDITRNLETLDELPRQLPAPH
PARIEIRGEVFMTKPDFLAFHAEQTRLHEEREARRAAGEPVGPAIRIPVNPRNAAAGSLR
QLDPAVTASRPLRLFAYAQGESSEPVAETHSEYLKRLEGWGFRVNPLSRLLPDEHAAGAF
QAELAEKRAGLAYDIDGVVYKLDRLDWQSRLGFVGRAPRWAIAWKFPAEQATTTLLDIQI
QVGRTGALTPRAVMQPVNVGGVMVQHATLHNEDEIARKDVRIGDTVILQRAGDVIPQITG
IVPEKRPADSRPFVFPDTCPACGSHAVRPPGEVIKRCTGGLICPAQQVERLIHFASRNAM
DIEGLGIENIELLHREGLVNTPAGIFRLKGHTERMRGWEGWGGRSGKDSRKITNLLAAIE
ARREPSLERFLFGLGIRRIGAQNARLLARHYGTVEHWRQAMLDARILGSEAREDLGGIQG
IGPAIAQELVEFFSEPRNLEALDDLLREVHPQPAETVAEGALSGKSIVFTGSLETMTRQE
AEARAESLGAKVVKSVSKKTDLVVIGADAGSKAKKAAELGLRTLTEAEWRELAGMG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaccgaaccgaatcgcgtcccgtcgagtcgctcaacgaggaggaggcgcgcgcc
gagcttgcccgcctggccgggcagatcgccgaggccgacctcgcctaccaccagcaggac
gcaccgatcatgtcggacgcggcctatgacgcgctgcgccgccggaacaccgcgatcgag
gagcgtttccctgccctgaagcgggaagacagcccgaacgaggcgccgcccggcgcgccc
ccggcggcaggcttcagcaagagccggcacggcacgccgatgctcagcctggacaatgtc
ttcggcccggaggaattcgccgagttcgccgcccgcatccgccgcttcctgggcctttcg
gccgaggaggtgctgcgcttcgtgggcgagcccaagatcgacgggctttcggtgaacctg
ctctacgaggacgggcgcttcgtgcggggcgccacgcgcggcgacggcatggtgggcgag
gacatcacccgcaacctggaaacgctggacgagctgccccgccagcttccggcgcctcat
cccgcccgcatcgagatccggggcgaggtcttcatgaccaagcccgacttcctcgccttc
catgccgagcagacccggctgcacgaggagcgcgaggcccgccgcgccgcgggcgagccg
gtgggtccggcgatccgcattcccgtcaacccgcgcaacgccgccgccggctcgctgcgc
cagctcgacccggcggtgacggccagccgccccctgcgcctcttcgcctatgcccagggc
gagtccagcgagccggtggcggaaactcattccgagtacctgaagcggttggaaggctgg
ggtttccgggtgaacccgctctcccggctcctgcccgacgaacatgccgccggggccttc
caggcggagctggcggaaaagcgcgccggcctcgcctatgacatcgacggcgtggtgtac
aagctggaccggctggactggcagagccgcctgggcttcgtcggccgcgccccgcgctgg
gccatcgcctggaagttcccggcggaacaggcgaccaccaccctgctggacatccagatc
caggtcggccgcaccggggcgctgacgccgcgcgcggtgatgcagccggtcaatgtcggc
ggcgtcatggtgcagcacgccaccctgcacaacgaggacgagatcgcccgcaaggatgtc
cgcatcggcgacacggtgatcctgcagcgcgccggcgacgtgatcccgcagatcaccggc
atcgtgccggagaagcgcccggcggacagtcggcccttcgtctttcccgacacctgcccc
gcctgcggctcccatgccgtgcggccgccgggcgaggtgatcaagcgctgcacgggtggc
ctgatctgcccggcgcaacaggtggagcggctgatccacttcgcctcgcgcaacgcgatg
gacatcgaggggctgggcatcgagaacatcgagctgctgcaccgcgaggggctggtgaac
acccccgccgggatcttccgcctcaagggccacacagagcggatgcgtggctgggaaggc
tggggcggccgctccggcaaggattccaggaagatcaccaacctcctcgccgccatcgag
gcgcggcgggaaccgtccctggaacgcttcctcttcggcctgggcatccggcgcatcggc
gcgcagaacgcccgcctcctcgcccgccactacggcacggtggaacactggcgccaggcc
atgctcgatgcccgcatcctgggctccgaggcacgggaggatctgggcggcatccagggc
atcggcccggccatcgcgcaggagctggtggagttcttctccgagccccgcaacctggag
gccctggacgacctgctgcgggaggtccacccgcaaccggccgagacggtggccgagggc
gcgctttccggcaagagcatcgtcttcaccggctccctggaaaccatgacgcggcaggag
gccgaggcccgcgcggaatcgctgggtgccaaggtggtgaagagcgtttccaagaagacc
gacctcgtggtgatcggcgccgatgccggctccaaggccaagaaggccgcggagctcggc
cttcgcaccctcaccgaggcggagtggcgcgagctggccgggatgggttga
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integrated database retrieval system
