Ralstonia nicotianae: GO999_09365
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Entry
GO999_09365 CDS
T09041
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rnc
Ralstonia nicotianae
Pathway
rnc03030
DNA replication
rnc03410
Base excision repair
rnc03420
Nucleotide excision repair
rnc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GO999_09365 (ligA)
03410 Base excision repair
GO999_09365 (ligA)
03420 Nucleotide excision repair
GO999_09365 (ligA)
03430 Mismatch repair
GO999_09365 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rnc03032
]
GO999_09365 (ligA)
03400 DNA repair and recombination proteins [BR:
rnc03400
]
GO999_09365 (ligA)
Enzymes [BR:
rnc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GO999_09365 (ligA)
DNA replication proteins [BR:
rnc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GO999_09365 (ligA)
DNA repair and recombination proteins [BR:
rnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GO999_09365 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GO999_09365 (ligA)
MMR (mismatch excision repair)
DNA ligase
GO999_09365 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GO999_09365 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
DUF4796_N
HHH
Motif
Other DBs
NCBI-ProteinID:
QUP58753
UniProt:
A0ABX7ZTI0
LinkDB
All DBs
Position
complement(2077929..2080370)
Genome browser
AA seq
813 aa
AA seq
DB search
MSKTEHPASGASPEARAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPE
LRTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDP
PVEYAAELKFDGLAINLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVGGAV
PDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA
YGLGEAAGWSGMPDTHSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAKRDSLPFD
IDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARL
VPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGS
DLFNPTQQPKHPPFELPRSCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRM
MDIEGLGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATK
WAENLLDGIRASKTPPLARFLFAMGIRHVGESTAKTLADWLGSLAIVRRAPAPLLLTLPD
VGATVAEAIADFFAEPKNQQALDALLTAGVAPQGEHPPSAKLRDQLEPAELYAALGVPKL
TAIRSKQLATLVPSLAQLANVDTAQLEGLQADVSASLLAWLDADDHRTRLGALDALRAEL
LAAMPAGAAEEGALSGKTVVLTGTLPTLSRDEAKAMLEAAGAKVSGSVSKKTDYVVAGVE
AGSKLARAQELGVRVLDEAGMLALLQNPPGDSA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaccgaacatcccgcgtccggcgcgtcgcccgaggcgcgggcagccgcgctg
cgcgcgacgctgaaccgctacgcccacgagtactacgtgctggaccagcccagcgtgccg
gacgccgaatacgatcggctctaccgcgagctggaagccctggaagccgaacacccagaa
ctgcggacgccggattcgcccaccctgcgggtcggcggcgccgtgctgccggagttcgcg
ccggtgcggcacgtggtgccgatgctctcgatccgcaccgagaccgacaccaccgccggc
ggcgcgctggacttcgatgccagcgtgcgccgcgaactggggctggccgaatccgatccg
cccgtcgaatacgcggcggagctcaagttcgatggcctggcgatcaacctgcgctacgag
aaaggcttcctggtccaggccgccacgcgcggcgacggggccaccggcgaagacgtgacg
cagaacatccgcaccatccgccagatccccctcggcctgcggcccgtcggcggcgccgtg
cccgacgtgctcgaagtgcgcggcgaagtctacatgcggcgcgacgatttcgagcgcctc
aatgcccgccagcgcgagcgcggcgacaagaccttcgtcaacccgcgcaacaccgctgcc
ggcgcggtgcgccagctcgacccgaagatggccgccgagcgcccgctgtcgttcttcgcc
tatggcctgggcgaggcggccggctggagcgggatgcccgacacgcattccggcatgctc
gatgcactggtcgcctacggtttcccggtcagcaaggaacgtgcggcagtgaagggcggg
gaagggctggtgcaattccacgccgccatcggcgccaagcgcgacagcctgccgttcgat
atcgatggcgtggtctacaaggtcaactcgctggcactgcagcgcgagctgggctttcgc
acgcgcgagccgcgctgggcggtggcgcacaagtacccggcgcaggaggcgctgaccacg
gtcgagtcgatcggcgtgcaggtcggccgcaccggggccatcacgccggtggcgcgtctg
gtgccggtgttcgtcggcggcgtgacggtcaccaacgccaccctgcacaacgaagacgaa
gtccgccgcaaggacgtgcgcgtgggcgacaccgtgatcgtgcgccgcgccggcgacgtg
atccccgaggtggtggccgtggtgctggagcgccgcccgatggaagacgtgccgggcagc
gatctgttcaaccccacgcagcagcccaagcatccgccgttcgaactgcccaggagttgc
ccggtctgcggctcgcacgtggtgcgcgaagagggcgaggcggtggcgcgctgctcgggc
ggcctgttctgctcggcgcagcgcaaggaggcgatccgccatttcgccggccgccgcatg
atggacatcgaaggcctgggcgagcgctacatcgacaacctcgtcgagctggaatacgtg
cacggcatcgccgacctgtaccggctcacgctcgacgatttcctggaaatgaagcgccgc
gccgacgagcgcgacggcgtgaccccggagaccgtggccgccggcaagatcgccaccaag
tgggccgagaacctgctggacggcatccgggccagcaagaccccgccgctggcgcgcttc
ctgttcgcgatgggcatccgccatgtcggcgaatcgacggccaagacgctggccgactgg
ctgggcagcctggcgatagtccgccgcgcgccggcgccgctgctgctgaccttgcccgac
gtgggggcgaccgtcgccgaggccatcgccgatttctttgccgagccgaagaaccagcag
gcgctcgacgccctgctcaccgccggtgtggcgccccagggcgagcacccgcccagcgcg
aagctgcgcgaccaactggagcccgccgaactgtacgccgcgctcggcgtgcccaagctg
acggccatccgcagcaagcagctggcgacgctggtgccgtcgctcgcgcaactggccaac
gtcgacaccgcgcagctggaaggcctgcaggcggacgtgtcggcgtcgctgctggcctgg
ctggacgccgacgaccatcgcacccggctgggggcgctggacgcgctgcgcgccgaactg
cttgccgccatgccggccggggccgccgaggaaggcgcgctgagcggcaagaccgtggtg
ctgaccggcacgctgcccaccctgagccgcgacgaggccaaggccatgctggaggcggcc
ggcgccaaggtgtccggctcggtgtcgaagaagaccgactacgttgtggctggcgttgag
gcgggcagcaagctcgcccgcgcgcaggagctgggcgtgcgggttctggacgaagccggt
atgctcgcgctgttgcagaacccgccgggagattccgcgtga
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