Rattus norvegicus (rat): 140933
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Entry
140933 CDS
T01003
Symbol
Trpc5
Name
(RefSeq) short transient receptor potential channel 5
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04360
Axon guidance
rno04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
140933 (Trpc5)
09158 Development and regeneration
04360 Axon guidance
140933 (Trpc5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rno01009
]
140933 (Trpc5)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rno04040
]
140933 (Trpc5)
Protein phosphatases and associated proteins [BR:
rno01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
140933 (Trpc5)
Ion channels [BR:
rno04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
140933 (Trpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
140933
NCBI-ProteinID:
NP_543174
RGD:
619787
Ensembl:
ENSRNOG00000027233
UniProt:
Q8VD38
A6ZIF3
LinkDB
All DBs
Position
X:complement(112742828..113027638)
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AA seq
974 aa
AA seq
DB search
MAQLYYKKVNYSPYRDRIPLQIVRAETELSAEEKAFLSAVEKGDYATVKQALQEAEIYYN
VNINCMDPLGRSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRK
PSGEKQVPTLMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVE
CVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEFKAE
YEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKLKVAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFI
KKPFIKFICHTASYLTFLFMLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIWGEIK
EMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAISNILSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETRAIDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFV
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPP
FNIIPSPKSFLYLGNWFNNTFCPKRDPDGRRRRHNLRSFTERHADSLIQNQHYQEVIRNL
VKRYVAAMIRNSKTNEGLTEENFKELKQDISSFRYEVLDLLGNRKHPRRSFSTSSAEFSQ
RDDTNDGSGGARAKSKSVSFNLGCKKKACQGAPLIRTMPRASGAQGKPKAESSGKRSFMG
PSFKKLGLLFSKFNGQTSEPTSEPMYTISDGIAQQHSMWQDIRYSQMEKGKAEACSQSEM
NLSEVELGEIRGAARSSECPLACSSSLHCASGICSSNSKLLDSSEDVFETWGEACDLLMH
KWGDGQEEQVTTRL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgtactacaagaaggtcaactactcaccatacagagaccgcatccccctc
caaatcgtgagggctgagactgagctgtctgctgaggagaaagctttccttagtgctgtg
gagaagggggactatgccaccgtgaagcaggcactgcaggaggccgagatctactacaat
gtcaacatcaactgcatggatcctttgggcaggagcgccctactcattgccattgagaat
gagaacttagagatcatggagctactgctgaaccacagtgtgtatgtgggcgatgcatta
ctctatgccatccgcaaggaggtggtaggagctgtggaacttctgctcagctacaggaag
ccaagtggagagaagcaggttcccactctgatgatggacacccagttctctgagttcaca
ccagacatcacacccatcatgttggcagcccacaccaacaactatgaaatcatcaaattg
cttgtccaaaagcgtgtcactatcccacggccccaccaaatccgctgcaactgtgtggag
tgtgtgtccagttcagaagtagacagcctacgtcattcaaggtcccgactgaacatatac
aaggcactggcaagcccttcgctcatcgccttatcaagtgaggaccctatcctcacagca
ttccggctgggctgggaactcaaggagctgagcaaggtggaaaatgagttcaaggctgag
tatgaggagctctcccaacagtgtaagctctttgccaaggacctgctggatcaagctcgg
agctcccgagaactggagatcattctcaaccatcgagatgaccacagcgaagaacttgac
ccacagaagtaccatgacctggccaagctgaaggtggcaatcaaatatcaccagaaagag
tttgtcgctcagccaaactgtcaacaattgctggccaccttgtggtacgatggcttccct
ggatggcgaagaaaacactgggtagtcaagcttctaacctgcatgaccattggattcctg
tttcctatgctgtccatagcctatctgatctcacccagaagcaaccttgggcttttcatc
aagaaaccctttatcaagttcatctgccacacagcatcctatctgaccttcctcttcatg
cttctcctggcttctcagcatattgtcagaacagacctccatgttcaaggacctccccca
actgtcgtggaatggatgatactgccttgggttctaggtttcatctggggggaaataaag
gaaatgtgggatggtggattcactgaatacatccatgattggtggaatttgatggatttt
gcaatgaactccctctacctggcaactatttccttgaagattgtggcctatgtcaagtat
aatggttctcgtccaagggaagaatgggaaatgtggcacccgactctgattgcggaagca
ctcttcgcgatatcgaacattttaagttccttgcgtctcatatccttgttcacagccaac
tcccacttagggcctctgcagatctccttgggacgcatgctgcttgatatactcaaattt
ctctttatctactgcctagtactactggcttttgccaacggactgaaccagctttatttt
tactatgagaccagagctattgatgaacctaacaactgcaaaggaatccggtgtgaaaaa
cagaacaacgccttctccacgctctttgaaacccttcagtcactcttctggtctgtgttt
ggccttttaaacctctatgttaccaatgtgaaggcccggcatgaattcacggagtttgtg
ggagctactatgtttgggacatacaacgtcatctccctggtagtgctactgaacatgctc
attgccatgatgaacaactcctaccagctcattgccgaccatgctgatattgagtggaag
tttgcgagaacgaagctctggatgagttactttgatgaaggtggcaccttaccacctcct
ttcaacatcatccccagccccaaatcatttctctatcttggcaactggttcaacaacacc
ttctgtcccaagagagaccccgatgggagacgaaggaggcacaacttgagaagcttcaca
gaacgtcatgctgacagcctgatccaaaatcaacattatcaggaagttatcagaaatcta
gtcaagagatatgtggctgccatgataagaaactcgaaaacaaatgaggggctaacagaa
gaaaattttaaggaattaaagcaggacatttccagctttcgatacgaagtacttgacctc
ttgggaaatagaaaacatccaagaagaagcttttccactagcagcgctgaattctctcaa
agggatgataccaatgatggcagtggtggggctcgggccaaatctaagagtgtctctttc
aatttaggctgcaagaaaaaggcctgccagggagcacctctcatcagaaccatgccaaga
gctagtggtgcccaaggaaagccgaaagctgagtcgtcaggcaaacggtccttcatgggt
ccctctttcaagaaactgggtctcctgttctccaagtttaatggtcagacctctgaacct
acttcggagccaatgtacacaatctctgatggcatcgcacagcagcactctatgtggcag
gacatcagatattctcagatggagaaagggaaggcagaggcctgttcgcaaagtgagatg
aacctcagtgaggtagagttaggtgaaatccggggtgctgctcggagcagtgaatgcccc
ctagcctgttccagctctcttcactgtgcatccggcatctgctcctcaaattcgaaactt
ttagactcatcagaggacgtatttgaaacttggggagaggcctgtgacttgctcatgcac
aaatggggtgatggacaggaagaacaagttacaactcggctctaa
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