Rattus norvegicus (rat): 25722
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Entry
25722 CDS
T01003
Symbol
Scn4a
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rno04040
]
25722 (Scn4a)
Ion channels [BR:
rno04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
25722 (Scn4a)
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
25722
NCBI-ProteinID:
NP_037310
RGD:
3636
Ensembl:
ENSRNOG00000012134
UniProt:
P15390
D3ZW75
Structure
PDB
PDBj
LinkDB
All DBs
Position
10:complement(91745459..91796452)
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AA seq
1840 aa
AA seq
DB search
MASSSLPNLVPPGPHCLRPFTPESLAAIEQRAVEEEARLQRNKQMEIEEPERKPRSDLEA
GKNLPLIYGDPPPEVIGIPLEDLDPYYSDKKTFIVLNKGKAIFRFSATPALYLLSPFSIV
RRVAIKVLIHALFSMFIMITILTNCVFMTMSNPPSWSKHVEYTFTGIYTFESLIKMLARG
FCIDDFTFLRDPWNWLDFSVITMAYVTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPMNDTNTTWYGNDTW
YSNDTWYGNDTWYINDTWNSQESWAGNSTFDWEAYINDEGNFYFLEGSNDALLCGNSSDA
GHCPEGYECIKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIF
FVVIIFLGSFYLINLILAVVAMAYAEQNEATLAEDQEKEEEFQQMLEKYKKHQEEVEKAK
AAQALESGEEADGDPTHNKDCNGSLDASGEKGPPRPSCSADSAISDAMEELEEAHQKCPP
WWYKCAHKVLIWNCCAPWVKFKHIIYLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHF
DNVLSVGNLVFTGIFTAEMVLKLIAMDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSY
KECVCKIASDCNLPRWHMNDFFHSFLIVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVM
VIGNLVVLNLFLALLLSSFSADSLAASDEDGEMNNLQIAIGRIKWGIGFAKTFLLGLLRG
KILSPKEIILSLGEPGGAGENAEESTPEDEKKEPPPEDKELKDNHILNHVGLTDGPRSSI
ELDHLNFINNPYLTIHVPIASEESDLEMPTEEETDAFSEPEDIKKPLQPLYDGNSSVCST
ADYKPPEEDPEEQAEENPEGEQPEECFTEACVKRCPCLYVDISQGRGKMWWTLRRACFKI
VEHNWFETFIVFMILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFILEMLLKWVAY
GFKVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMR
VVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTTSERFDISVVNNKS
ECESLMYTGQVRWMNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPDYEV
NLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLG
SKKPQKPIPRPQNKIQGMVYDFVTKQVFDISIMILICLNMVTMMVETDDQSQLKVDILYN
INMVFIIIFTGECVLKMFALRHYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLF
RVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYV
KKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPTLENPGTNVRGD
CGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLSEDDFEMFYETWEKF
DPDATQFIDYSRLSDFVDTLQEPLKIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEV
LGDSGEMDALKQTMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKIQRAYRRHLLQRSV
KQASYMYRHSQDGNGDGAPEKEGLLANTMNKMYGHEKEGDGVQSQGEEEKASTEDAGPTV
EPKPTSSSDTALTPSPPPLPPSSSPPQGQTVRPGVKESLV
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggccagctcatctctgcccaacctggtccccccgggtccccactgcctgcgccccttc
accccagagtccctggcagccatagagcagcgggcggtggaggaggaggcccggctgcag
cggaacaagcagatggagattgaggagcctgagcggaagccacgcagtgacctggaagct
ggcaagaacctcccactcatctatggggaccccccacccgaagtcattggcatccccctg
gaggacctggatccttactacagtgacaagaagaccttcattgtgctcaacaaaggaaag
gccatcttccgattctctgccacgcctgccctctacctgctgagccccttcagcatcgtc
aggagggtggctatcaaggtgctcattcacgcgctgttcagcatgtttatcatgatcacc
atcctgaccaactgtgtgttcatgaccatgagcaatccgccttcttggtccaaacacgtg
gagtacaccttcacggggatctatacctttgagtccctcattaagatgctggcccgaggc
ttttgcattgatgacttcacattcctccgagacccctggaactggctggacttcagtgtc
atcacaatggcgtatgtgacagagtttgtggacttgggcaacatctcagccctgaggacc
ttccgtgtgctgcgggccctgaagaccatcacggttatcccagggctgaagacaattgtg
ggagccctgatccagtctgtgaaaaagctgtcggatgtgatgatcctcactgtcttctgc
ctgagtgtctttgccctggtggggctgcagcttttcatgggaaacctgcgtcagaagtgc
gtgcgttggcccccgcccatgaatgacaccaacaccacgtggtatggcaatgacacttgg
tacagcaatgacacttggtacggcaatgacacttggtacatcaatgacacttggaacagc
caggagagctgggccggcaactctacctttgactgggaggcctacatcaatgacgaaggg
aacttctatttcttggagggctccaatgatgctctgctctgtgggaatagcagtgatgct
gggcactgccctgagggctacgaatgcataaaggctgggcggaaccccaactatggctac
accagctatgacaccttcagctgggctttcctggctctcttccggctcatgacgcaggac
tactgggagaaccttttccagctgaccctacgagctgctggcaagacctacatgatcttc
ttcgtggtcatcatcttcctgggctccttctacctcatcaatctgatcctggccgtggtg
gccatggcgtacgctgagcagaatgaggctaccctggccgaagaccaggagaaagaggag
gagttccaacagatgcttgagaaatacaaaaaacatcaggaggaagtggaaaaggctaag
gctgcccaggctctggaaagtggagaggaggcagatggggacccaacccacaacaaagac
tgcaatgggagcctggatgcatccggggagaaggggcccccaaggccaagctgcagcgca
gacagtgccatctcagatgctatggaggagctggaagaggcccatcagaagtgcccaccg
tggtggtacaagtgtgcacacaaagtcctcatctggaactgctgtgccccgtgggtgaag
ttcaaacatataatctacctgatcgtcatggacccctttgtggacctgggtatcaccatc
tgcattgtgctcaacaccctcttcatggccatggagcactaccccatgaccgagcacttt
gacaacgtgctctccgtgggcaacttggtcttcacaggcatcttcactgcggagatggtg
ttgaagctgattgccatggacccctacgagtatttccaacagggctggaacatctttgac
agtttcatcgtcaccctcagcctggtggagctgggcctggccaacgtacaggggctgtca
gtgctccgttccttccgcctgctgcgtgtcttcaagctggccaagtcatggccaacactc
aacatgctcatcaaaatcattggcaactcagtgggcgcgctgggcaacctgaccctggtg
ctggccatcatcgtcttcatcttcgccgtggtgggcatgcagctgttcggcaagagctat
aaggagtgtgtgtgcaagatcgcctcagactgcaacctgcctcgctggcacatgaacgac
ttcttccactccttcctcatcgtcttccgcatcctctgcggggaatggatcgagaccatg
tgggactgcatggaggtggccggccaggccatgtgcctcaccgtcttcctcatggtcatg
gtcattggcaacctggtggtcctgaatctgttcctggctctcctgctgagttccttcagt
gctgacagcctggcggcctcggatgaggatggcgagatgaacaacctacagattgccatc
gggcgtatcaagtggggcatcggttttgccaaaaccttcctcctggggctgttgcgtggc
aagatcctgagccccaaggaaataatactcagcctcggtgagcccgggggtgccggggaa
aatgccgaggagagtactcccgaggatgagaagaaggagccgccaccggaagataaggag
ctgaaagacaatcatatcctgaaccacgtgggcctgaccgatggcccccgctccagcatc
gagctggaccaccttaacttcatcaacaacccctacctcaccatccacgtgcccattgcc
tccgaggagtctgacctggagatgcccacagaggaggagacagacgccttctcggagcct
gaggatatcaagaagcccctacagcccctctacgacgggaactcctccgtctgcagcaca
gctgactacaagccccctgaagaggaccccgaggagcaggctgaggagaaccccgagggg
gagcagcctgaggaatgcttcacggaagcctgtgtgaagcgctgcccctgcctctatgtg
gacatctcccagggccgtgggaaaatgtggtggacactgcgcagggcctgtttcaagatt
gttgagcacaactggtttgagaccttcattgtcttcatgatcttgctcagcagtggagcc
ctggccttcgaagacatctacattgaacagcgacgagtcatccgcaccatcctggaatac
gccgacaaggtcttcacctacatcttcatcctggagatgttgctaaagtgggtcgcctac
ggcttcaaggtgtatttcaccaatgcctggtgctggctcgacttcctcatcgtggacgtc
tccatcatcagcctggtggcaaactggctgggctactctgagctggggcccatcaaatcc
ctgcgcacactccgggccctgcgacctctgagggcactgtctcgatttgagggtatgagg
gtggtggtgaacgccctcctgggagctatcccctccatcatgaacgtcctcctcgtctgc
ctcatcttctggctcatcttcagcatcatgggggtcaacttgtttgctggaaagttctac
tactgcgtcaacaccaccacctctgagagattcgacatctcggtggtcaacaacaagtcc
gagtgtgagagcctcatgtatacaggccaggtccgctggatgaatgtcaaggtcaactac
gacaacgtgggtctgggctatctctccctccttcaggtggccacattcaagggttggatg
gatatcatgtatgcagctgtggactcccgggagaaagaggagcagccagactatgaggtg
aacctctacatgtacctctacttcgtcatcttcatcatcttcggctccttcttcaccctc
aacctcttcatcggtgtcatcatcgacaacttcaaccaacagaagaagaagtttggaggg
aaagacatcttcatgacagaggaacagaagaaatactacaacgcgatgaagaagcttggc
tccaagaagccccagaagccaattccccggcctcagaacaagatccagggcatggtgtac
gacttcgtgacgaagcaggtgtttgacatctccatcatgatcctcatctgcctcaacatg
gttactatgatggtggagacagatgaccagagccagctcaaggtggacatcctgtacaac
atcaacatggtcttcattatcatcttcacaggggagtgtgtgctgaagatgtttgcccta
cgccattactacttcaccattggctggaacatctttgactttgtggttgtcatcttgtcc
atcgtgggccttgcgctctctgacttgatacagaaatactttgtgtcacccacgctgttc
cgtgtgatccgcttggctcggatcgggcgtgtcctgcgtctgatccgcggggccaagggc
atccggacgctgctgttcgccctgatgatgtccctgcccgccctcttcaacatcggcctc
cttctctttctggtcatgttcatctactcgatcttcggcatgtctaacttcgcctacgtc
aagaaagagtcaggcatcgacgacatgtttaactttgagacctttggcaacagtatcatc
tgcctcttcgagatcaccacgtcagccggctgggacgggcttctgaaccccatcctcaac
agtgggcccccagactgtgacccgacgttggagaacccgggtaccaatgtcaggggggac
tgcggcaacccttccatcggcatctgtttcttctgcagctacatcatcatctccttcctc
atcgtggtcaacatgtacattgctatcatcctggagaatttcaacgtggccaccgaagag
agcagcgagcccctcagtgaggatgacttcgagatgttctatgagacctgggagaagttc
gacccggacgccactcagttcatcgactacagccgcctctcggactttgtggacaccctg
caggagccgctgaaaatcgccaaacccaataagatcaagcttatcacgttagacctgccc
atggtgcccggcgacaagatccactgcttggacatcctctttgccctgaccaaagaggta
ctgggtgactctggggagatggacgccctcaagcagaccatggaggagaagtttatggca
gctaacccttccaaggtctcctatgagcccatcaccaccaccctcaagaggaagcaggag
gaggtgtgtgctatcaaaatccagagggcctaccgccgccacctgctgcagcgctccgtg
aagcaggcctcttacatgtaccgtcacagccaggacggcaatggcgacggggcccccgag
aaggagggattgcttgccaacaccatgaacaagatgtatggccatgagaaagagggtgat
ggtgtgcagagccagggggaggaagagaaggcctctacagaggatgctggacccaccgtg
gagcccaaacccaccagcagctcagatactgccctgactccttctcctccaccactaccc
ccctcatcatcaccgccacaagggcagacagttcgcccaggggtcaaagagtctcttgtc
tag
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