Rattus norvegicus (rat): 287739
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Entry
287739 CDS
T01003
Symbol
Eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform 1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
287739 (Eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
287739 (Eftud2)
Spliceosome [BR:
rno03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
287739 (Eftud2)
Complex C
U5 SnRNP specific factors
287739 (Eftud2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
287739
NCBI-ProteinID:
NP_001385527
RGD:
1560116
Ensembl:
ENSRNOG00000002818
UniProt:
F1LM66
LinkDB
All DBs
Position
10:complement(88304992..88352229)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDEDDVGEHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PSSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgaatttgggaattatatcggaccagagcttgattctgat
gaagatgacgatgaactgggaagagagacaaaagatcttgatgagatggatgaggatgag
gacgaggatgatgtgggcgagcacgatgatgaccaccctgggatggaggtggtgctacat
gaggacaagaagtactaccctacagccgaggaggtgtatggccctgaggtggagaccata
gtccaggaggaggacacccagcccctcacagagcctattataaagccagtgaaaaccaag
aaattcactctgatggagcagacattacctgtcacggtgtatgagatggatttcttagca
gatctgatggacaactctgagctcatccgaaatgtgaccttgtgtggccatctccaccat
ggcaagacctgttttgtagattgtttaatagaacagacgcatccggaaatcagaaagcgc
tatgatcaagatctatgctatactgacatcctcttcacagaacaagagagaggcgtcggc
atcaagagtactcctgtgacggtggtgctgccggacaccaaagggaagtcttacctcttc
aacatcatggacacaccaggtcatgtgaatttttctgatgaggtcacagctggcttgcgc
atctcagatggagtggtccttttcattgacgctgctgagggggtgatgctgaacacggag
cggctgatcaaacacgcagtgcaggaaaggctggcagtcaccgtgtgtatcaacaaaatc
gaccggctgatcttggagctgaagctgcctcccacagatgcttattacaagctacggcac
attgtggatgaggtcaatggcttaataagcatgtattccaccgacgagaacctgatcctt
tccccgctcctgggcaacgtctgcttctccagttcccagtacagcatctgcttcacactg
ggctcctttgccaagatctatgctgacacctttggtgacattaattaccaggaatttgct
aaaagactctggggtgacatctacttcaatcctaagacgagaaagttcacaaaaaaggct
ccaagcagcagctcccagaggagcttcgtggagttcatcttggagcctctctataagatc
ctggcacaggtggtgggtgatgtggacaccagcctgccaaggacactggacgagctcggc
atccacctgaccaaggaagaactgaagctaaacatccgccccctgctcaggctggtctgc
aaaaagttcttcggcgagttcaccggctttgtggacatgtgtgtgcagcacattccatct
ccaaaggtgggcgccaaacccaagatcgagcatacctacactggcggcgtggactctgac
cttggcgaggccatgagtgactgtgacccggatggtcccctgatgtgccatactactaag
atgtacagcacagatgatggagttcagtttcacgcctttggccgggtcctgagtggcacc
atccatgctgggcagcctgtaaaggtgctgggggagaactacactctggaagacgaagaa
gattcccagatatgcactgtgggccgcctttggatctccgtcgccaggtaccacattgag
gtgaatcgtgttcctgctggcaactgggttctgatagaaggtgttgatcagccaattgtg
aagacagcaaccataactgaaccccgaggcaatgaggaggctcagattttccgacccttg
aaattcaataccacatctgttatcaagattgctgtggagccagtcaacccctcagagctg
cccaaaatgcttgatggcctgcgcaaggtcaacaagagctacccgtctcttaccaccaag
gtggaagagtctggtgagcacgtgatcctgggcactggggagctctacctggactgcgtg
atgcacgaccttcggaagatgtactccgagatcgacatcaaggtggctgacccagttgtg
acgttttgtgagaccgtggtagagacatcctccctcaaatgctttgctgaaacacccaat
aagaagaacaagatcaccatgattgctgagcctcttgagaagggcctcgctgaggacata
gagaacgaggtggtccagatcacctggaacagaaagaagctgggagagttcttccaaaca
aagtacgactgggatctgctggccgcccgttctatctgggcctttggtcctgatgctaca
ggccccaacatcctagtggacgacacgttgccctcagaggtagacaaggcccttctgggc
tcagtgaaggacagcattgttcaaggtttccagtgggggaccagggaaggacccctctgc
gatgaattgattcggaatgtcaagtttaagattctggatgctgtggttgcccaggaaccc
ctgcaccggggcggaggtcagatcatccccacagccaggagggtagtgtactctgccttc
ctcatggccactccccgcctgatggagccctactactttgtagaggtccaggctcctgca
gattgtgtgtctgctgtttacacagtcctggccaggcgcaggggtcatgtgactcaggat
gcacccattccaggctcccctctctacaccatcaaagcgttcatcccagccattgactca
ttcggctttgagactgatctccgcactcatacccagggacaggccttctctctgtctgtc
ttccaccattggcagattgtccccggtgatccgctggacaagagcattgttatccgtccc
ttggagccacagccagctcctcacctggctcgggagttcatgatcaaaacccgccgtagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgaccctatgctgctggag
ctcgccaagcaggatgtcgtgctcaattatcccatgtga
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