KEGG   Rattus norvegicus (rat): 297455
Entry
297455            CDS       T01003                                 
Symbol
Lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    297455 (Lsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    297455 (Lsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    297455 (Lsm3)
   03041 Spliceosome [BR:rno03041]
    297455 (Lsm3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     297455 (Lsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     297455 (Lsm3)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    297455 (Lsm3)
 Complex C
  U2 snRNP components
    297455 (Lsm3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 297455
NCBI-ProteinID: NP_001100081
RGD: 1305971
Ensembl: ENSRNOG00000008733
UniProt: A6IBA3 D4A7U6
LinkDB
Position
4:125578185..125584429
AA seq 102 aa
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgtagatcagcaacagaccaccaataccgtagaggagcccctggatctt
ataagactcagcttggatgagcgaatttatgtgaaaatgagaaatgaccgagagcttcga
ggcagattacatgcttacgatcaacatttaaatatgattctgggagatgtagaagaaact
gtgacgacgatagagattgatgaggagacgtatgaagagatatataaatccacaaaacgg
aatatccccatgctcttcgtccggggagatggtgttgttctagtcgcccctccattgaga
gttggctga

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