Rattus norvegicus (rat): 297989
Help
Entry
297989 CDS
T01003
Symbol
Rig1
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04064
NF-kappa B signaling pathway
rno04622
RIG-I-like receptor signaling pathway
rno04623
Cytosolic DNA-sensing pathway
rno05160
Hepatitis C
rno05161
Hepatitis B
rno05162
Measles
rno05164
Influenza A
rno05168
Herpes simplex virus 1 infection
rno05169
Epstein-Barr virus infection
rno05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
297989 (Rig1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
297989 (Rig1)
04623 Cytosolic DNA-sensing pathway
297989 (Rig1)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
297989 (Rig1)
05160 Hepatitis C
297989 (Rig1)
05171 Coronavirus disease - COVID-19
297989 (Rig1)
05164 Influenza A
297989 (Rig1)
05162 Measles
297989 (Rig1)
05168 Herpes simplex virus 1 infection
297989 (Rig1)
05169 Epstein-Barr virus infection
297989 (Rig1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rno04054
]
297989 (Rig1)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
297989 (Rig1)
Pattern recognition receptors [BR:
rno04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
297989 (Rig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
zf-C2H2_aberr
Motif
Other DBs
NCBI-GeneID:
297989
NCBI-ProteinID:
NP_001382000
RGD:
1309460
Ensembl:
ENSRNOG00000006384
UniProt:
D4ADT5
LinkDB
All DBs
Position
5:complement(60117398..60165995)
Genome browser
AA seq
926 aa
AA seq
DB search
MTAEQRQNLQAFRDYIKKILDPTYILSYMSSWLRDDEVQCIQAEKNNKGPIEAASLFLRY
LLELQTEGWFRAFLDALYHAGYCGLYEAIETWDFQKLEKLEEHRLLLRRLEPEFKATVSP
TDILSEISECLINQECEEIRQICFTKGRMAGAEKMVQCLLRSDKENWPKVLQFALEKDNS
KFSELWLVDKGVRRVDCKAVEDDGTEMASIQIFIQEEPECQNLSQNPGPPSEASPNNSHS
PLKPRNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHHLKNFPHGQKGKVVFFANQ
IPVYEQQATVFSRYFERFGYNVAGISGATADNVSVQHIIENNDIVILTPQILVNSLNNGA
IPSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLTASVGVGDAKT
VEEAMLHICKLCAALDASVIATVRDNVEELEQVVYKPQKISRKVESRASNTFKCIISQLM
REAERLAKNVSEELGKFFQIQNREFGTQKYEQWIVAVHKACTVFQMPDKDEESRICKALF
LYTSHLRKYNDALIISEDAQMKDALNYLKAFFHDVREAAFDETEQDLTRRFEEKLEELEN
VSRDPSNENPKLRDLYLILQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG
ILTGRGRTNQATGMTLPAQKCVLEAFRANADNNILIATSVADEGIDIAQCNLVILYEYVG
NVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKANMVKEKIMNESILRLQTWDEVKFQKT
VHRIQLDEKLLRDSQHKPQPVPDRENKKLLCGKCKTFACYTADIRVVEKSHYTVLGDAFK
ERFVCKPHPKPKIYDSFEKKAKIFCAKQNCSHDWGIFVRYKTFEIPVIKIESFVVEDIES
GVQNRHSKWKDFHFERKQFNPEEMST
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagagcagcggcagaatctgcaagcattcagagactatatcaagaagattctg
gaccccacctacatcctcagctatatgagttcctggctccgggatgatgaggtgcagtgc
attcaggccgagaagaacaacaagggcccaatagaggccgcctcactgttcctccggtac
ctgttggagctgcagacagagggctggttccgggcctttttggatgccctgtaccatgca
ggttactgtggactttatgaagccatcgaaacttgggactttcaaaaacttgaaaagtta
gaggaacacagattacttttaagacgtttagagccggaatttaaggccacagttagcccg
acagatatcctttctgaaatatctgaatgtttgattaatcaggaatgtgaagaaatcaga
cagatctgcttcactaaagggaggatggcgggtgcggagaagatggtccaatgtcttctc
agatccgataaggagaactggccaaaggttttgcagtttgctttggagaaagacaacagc
aagtttagtgaactgtggctcgtcgataaaggtgtcagaagggttgactgtaaggctgtt
gaggatgacggaacagagatggccagcatacagattttcattcaggaagaaccggagtgt
cagaatctcagtcagaatcccggccctccttcagaagcgtctcctaataattcacacagc
ccattgaaaccaagaaattaccaactggagcttgccctgcctgccaagaaagggaaaaat
acagtaatatgtgctcctactggttgtggaaaaacctttgtgtcgcttctcatatgcgaa
catcatcttaaaaactttccgcacggacagaaagggaaagtggtcttttttgctaaccag
atccctgtgtatgaacagcaggccactgtgttctcacgatatttcgaaagatttgggtac
aatgtcgccggcatttcgggggcaacggctgataatgtgtcagtgcagcacatcattgaa
aacaatgacatcgtcatcctgacaccccagattcttgtgaacagtctcaacaatggagcc
atcccctcgctgtctgtcttcactctgatgatattcgacgagtgtcataacaccagcaaa
caccacccgtacaaccagatcatgttcagatacctagatcacaaactcggagggtcaccc
gacccactgcctcaggtcattgggctgactgcttccgttggtgttggagatgctaaaacc
gtggaggaagccatgctgcacatctgcaaactctgtgccgccctcgatgcctcagtgatt
gccacagtcagagacaacgtggaagaactggagcaggttgtttataagcctcagaaaatt
tccaggaaagtggaatcacgggcttcgaacacgtttaaatgcatcatatctcagctgatg
agggaggcagagaggctggcgaagaacgtctctgaggaacttggaaagttctttcaaatt
caaaatcgagaatttggcacccagaaatatgagcagtggattgtcgccgttcacaaagca
tgcacggtgtttcagatgcctgacaaagatgaggagagcaggatctgcaaggcgctcttt
ctgtacacctcccacttgcggaaatacaacgacgccctcatcatcagcgaggatgcacag
atgaaagacgctctaaattacctcaaagccttcttccatgatgtccgagaagcagcattt
gatgagactgagcaagatcttacgcggaggtttgaagaaaaactggaggaactagaaaac
gtttccagggatcccagcaacgagaatcctaaactaagagacctctacttgatcttacaa
gaagaataccacttaaagccggagaccaagaccattctcttcgtgaagaccagagcactt
gtggatgctttgaagaaatggattgaagaaaatcctgcactgagttttctaaaacctggc
atactgactggacgtggcagaacaaaccaggcaacagggatgacgctccctgcacagaag
tgtgtgttggaggcattcagagccaatgcggataacaatattctgattgctacctcggtc
gctgatgaaggcattgacattgctcagtgcaatctcgtcatcctgtatgagtacgtgggc
aacgtcatcaagatgatccaaaccagaggcagaggaagagcacgagatagcaagtgcttc
ctcctgaccagcagtgctgatgtgattgaaaaagaaaaggcgaacatggtcaaggaaaaa
ataatgaatgagtccatcttaagactgcagacatgggatgaagtgaaatttcaaaagacg
gttcaccgcatacagctggatgaaaaactcctcagggacagtcaacacaaaccacagccc
gtccccgacagagaaaacaagaaactgctgtgtggaaagtgcaagacttttgcgtgctac
acagctgacattcgagtggtcgagaaatcccactacactgtgcttggagatgcttttaag
gagcgctttgtgtgtaagccacaccctaaaccaaagatctatgatagttttgagaagaaa
gcaaaaatattctgtgccaaacagaactgcagccatgactgggggatttttgtgagatac
aagacgtttgagattccagtcataaaaatcgaaagcttcgttgttgaagatattgagagt
ggagttcagaaccggcactcaaagtggaaggactttcattttgaaagaaaacagttcaat
cccgaagaaatgtccacatga
DBGET
integrated database retrieval system
