Rattus norvegicus (rat): 307305
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Entry
307305 CDS
T01003
Symbol
Prdm6
Name
(RefSeq) putative histone-lysine N-methyltransferase PRDM6 isoform X1
KO
K20795
[histone H4]-lysine20 N-methyltransferase PRDM6 [EC:
2.1.1.361
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno00310
Lysine degradation
rno01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
307305 (Prdm6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
307305 (Prdm6)
03036 Chromosome and associated proteins [BR:
rno03036
]
307305 (Prdm6)
Enzymes [BR:
rno01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.361 [histone H4]-lysine20 N-methyltransferase
307305 (Prdm6)
Transcription factors [BR:
rno03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
307305 (Prdm6)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
307305 (Prdm6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
SET
zf-H2C2_2
zf-C2H2_4
Zap1_zf1
zf-C2H2_jaz
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
307305
NCBI-ProteinID:
XP_008770411
RGD:
1559594
Ensembl:
ENSRNOG00000030486
LinkDB
All DBs
Position
18:49102290..49206763
Genome browser
AA seq
609 aa
AA seq
DB search
MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGGGGPLKGSGAALALGAPQSLQPPLPPPPP
ERAEPPPDSLRPRPASLSSVSSTPAPSSTSASSASSCAAAAAAAAAALAGLSALPVSQMP
VFAPLAAAAVAAEPLPPKDLCLGASSGPGPAKCGGGGSVGDGRGVPRFRCSAEELDYYLY
GQQRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELP
EWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQTGAVRNTQHL
WEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACVDIPRGT
ELLVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDSLQQPFNKSSKLSPSGQQR
SVVFPQTPCSRNFSLLDKSGPIEAGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQ
CFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRA
FAGATTLNNHIRTHTGEKPFKKLGTFCLLKRLEDFPHVCVRDVPFKAVTSVPVPREGTRL
QFRVKWQLS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagccgggggaccccggcggctcggccttcctcaaagtggacccagcttacctg
cagcactggcagcaactcttcccgcatggaggaggcggcggcccgctcaaaggcagcggc
gccgcgctcgccctgggcgcgccccagtccctgcagccgccgctaccgccgccgcctcct
gagcgcgccgagcctccaccggacagcctgcggccgcggcctgcctcgctctcgtcagtc
tcatccaccccggctccttcctccacctctgcctcttctgcctcctcctgcgctgctgcc
gccgccgcggccgccgccgcgctggcgggtctctcggccctgcccgtgtcgcagatgccg
gtgttcgcgcctctagctgctgctgcggtggccgcggagccgctgcccccaaaggacctg
tgcctcggcgcctcctcgggccccgggccggctaagtgcggcggcggcggcagcgtgggt
gacggccgtggcgtcccacgtttccgctgcagcgccgaggagctggactattacctgtat
gggcagcagcgcatggaaatcatcccgctcaaccagcacaccagcgaccccaacaatcgt
tgcgacatgtgcgcggacaaccgcaacggggagtgccccatgcacgggccgctgcactcg
ctgcgccggcttgtgggcaccagcagcgcggcggccgctgcacccccgccggagctgccc
gagtggctacgggacctgccgcgggaggtatgcctgtgcaccagcaccgtgccaggcctg
gcgtacggcatctgtgccgcacagaggatccagcagggcacctggattgggcccttccag
ggcgtgctcctgcccccggagaaagtgcagaccggcgcagtgaggaacacgcagcacctc
tgggagatctatgatcaagatgggacacttcagcactttattgatggtggggagcctagt
aagtcgagctggatgaggtatatccgatgtgcaaggcactgtggagaacagaatctaaca
gtagttcagtacaggtcgaatatattctaccgagcctgtgtagatattcccaggggcacc
gagcttctggtgtggtacaatgacagctatacgtctttctttgggattcctttacaatgc
attgcccaggatgaaaacttgaatgtcccttccacggtaatggaagccatgtgccgacaa
gattccctgcagcagcccttcaacaagagcagcaagctttctccctcgggccagcagcgc
tccgtggttttcccacagactccctgcagcaggaatttctctctgttggataaatctggg
cccatcgaggcaggatttaaccaaatcaacgtgaagaatcagagggtcctggcgagccca
acctctaccagccagctgcactcggagttcagcgactggcacctctggaagtgcggccag
tgctttaagactttcacgcagcgcattctcctgcagatgcacgtgtgtacgcagaaccct
gacagaccctaccagtgtggccactgctcgcagtccttttcccagccatcagaactgagg
aaccacgtagtcactcactccagtgaccggcctttcaagtgtggctactgtggccgtgcc
tttgctggggccaccaccctcaacaaccacatccggacccacactggagaaaagcccttc
aagaagttggggactttctgtttgctgaagcgtttggaagactttccacatgtatgtgtc
cgtgatgttcccttcaaggctgtgacatcagtgcccgtgccaagggaaggcacaagattg
caattcagggttaaatggcagctcagctga
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