KEGG   Rattus norvegicus (rat): 309622
Entry
309622            CDS       T01003                                 
Symbol
RT1-Bb
Name
(RefSeq) rano class II histocompatibility antigen, B-1 beta chain precursor
  KO
K06752  MHC class II antigen
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04514  Cell adhesion molecule (CAM) interaction
rno04612  Antigen processing and presentation
rno04640  Hematopoietic cell lineage
rno04658  Th1 and Th2 cell differentiation
rno04659  Th17 cell differentiation
rno04672  Intestinal immune network for IgA production
rno04940  Type I diabetes mellitus
rno05140  Leishmaniasis
rno05145  Toxoplasmosis
rno05150  Staphylococcus aureus infection
rno05152  Tuberculosis
rno05164  Influenza A
rno05166  Human T-cell leukemia virus 1 infection
rno05168  Herpes simplex virus 1 infection
rno05169  Epstein-Barr virus infection
rno05310  Asthma
rno05320  Autoimmune thyroid disease
rno05321  Inflammatory bowel disease
rno05322  Systemic lupus erythematosus
rno05323  Rheumatoid arthritis
rno05330  Allograft rejection
rno05332  Graft-versus-host disease
rno05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecule (CAM) interaction
    309622 (RT1-Bb)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    309622 (RT1-Bb)
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    309622 (RT1-Bb)
   04612 Antigen processing and presentation
    309622 (RT1-Bb)
   04658 Th1 and Th2 cell differentiation
    309622 (RT1-Bb)
   04659 Th17 cell differentiation
    309622 (RT1-Bb)
   04672 Intestinal immune network for IgA production
    309622 (RT1-Bb)
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    309622 (RT1-Bb)
   05164 Influenza A
    309622 (RT1-Bb)
   05168 Herpes simplex virus 1 infection
    309622 (RT1-Bb)
   05169 Epstein-Barr virus infection
    309622 (RT1-Bb)
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    309622 (RT1-Bb)
   05152 Tuberculosis
    309622 (RT1-Bb)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    309622 (RT1-Bb)
   05140 Leishmaniasis
    309622 (RT1-Bb)
  09163 Immune disease
   05310 Asthma
    309622 (RT1-Bb)
   05322 Systemic lupus erythematosus
    309622 (RT1-Bb)
   05323 Rheumatoid arthritis
    309622 (RT1-Bb)
   05320 Autoimmune thyroid disease
    309622 (RT1-Bb)
   05321 Inflammatory bowel disease
    309622 (RT1-Bb)
   05330 Allograft rejection
    309622 (RT1-Bb)
   05332 Graft-versus-host disease
    309622 (RT1-Bb)
  09166 Cardiovascular disease
   05416 Viral myocarditis
    309622 (RT1-Bb)
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    309622 (RT1-Bb)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    309622 (RT1-Bb)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   309622 (RT1-Bb)
  Exosomal proteins of epithelial cells
   309622 (RT1-Bb)
  Exosomal proteins of breast milk
   309622 (RT1-Bb)
SSDB
Motif
Pfam: MHC_II_beta C1-set Ig_3 C2-set_2 ig MHC_I
Other DBs
NCBI-GeneID: 309622
NCBI-ProteinID: NP_001004084
RGD: 3469
Ensembl: ENSRNOG00000032708
Vega: OTTRNOG00000001674
UniProt: Q6AYB1 A0A023ILS1
LinkDB
Position
20:complement(4598475..4604118)
AA seq 263 aa
MALQTPSFLLPAAVVVLMVLSSPGTEGRDSPRDFVFQFKGLCYYTNGTQRIRLVIRYIYN
REEYVRFDSDVGEFRALTELGRPSAEYYNKQYLERTRAELDTVCRHNYEETEVPTSLRRL
EQPNVAISLSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTQLIRNGDWT
FQILVMLEMTPQRGEVYICHVDHPSLESPVTVEWRAQSESAQSKMLSGIGGFVLGVIFLG
LGLFIRHKRQKGPRGPPPAGLLQ
NT seq 792 nt   +upstreamnt  +downstreamnt
atggctctgcagacccccagcttcctcctcccggcagctgtggttgtgctgatggtgctg
agcagcccagggactgagggcagagactccccaagggatttcgtattccagttcaagggc
ctgtgctactacaccaacgggacgcagcgcatacggctcgtgatcagatacatctacaac
cgggaggagtacgtgcgcttcgacagcgacgtgggcgagttccgcgcgctgaccgagctg
gggcggccctcagccgagtactataacaaacagtacctggagcggacgcgggccgagctg
gacacggtctgcagacacaactacgaggagacggaggtccccacctccctgcggcggctt
gagcagcccaatgtggccatctccctgtccaggacagaggccctcaaccaccacaacttg
ctggtctgctcagtgacagatttctacccagcccagatcaaagtgcgctggttccggaat
ggccaggaggagacggcgggggtcgtgtccacacagcttattaggaacggggactggacc
ttccagatcctggtcatgctggagatgacgcctcagcggggagaggtgtacatctgccat
gttgaccaccccagcctcgagagccccgtcacagtggagtggcgggcacagtccgagtct
gcccagagcaagatgctgagcggcatcgggggctttgtgctgggggtgatcttcctcggg
cttggccttttcatccgtcacaagcgtcagaaaggacctcgggggcctcctccagcaggg
ctcctacagtga

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