Rattus norvegicus (rat): 316732
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Entry
316732 CDS
T01003
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
316732 (Smchd1)
03400 DNA repair and recombination proteins [BR:
rno03400
]
316732 (Smchd1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
316732 (Smchd1)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
316732 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
316732
NCBI-ProteinID:
XP_063124009
RGD:
1307234
LinkDB
All DBs
Position
9:complement(118690050..118837281)
Genome browser
AA seq
2006 aa
AA seq
DB search
MAAEGAKDPGGLSKGSGRDGDIDGCRTVYLFDRRGKDSELGDRALQVPERAGYAEFRASV
CQTIGISSEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVDQSLLTATKERIDFVPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNVGVRRIQIKLLFDETQGKPAV
AVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPIDSKDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHITN
DDERFLHNLIVEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGN
EISTAKDVGPFNNIDIEISLFEKGKTPKIVNLREIQDDMQTLYINTASDSFEFKAHVEGD
GVVEGVIRYHPFLYDRETYPDDPCFPSKLRDEDDDDDCFIPEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKHDKQIKFTLFKGIITRPDLPSKKQGPWATFS
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLHGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKTIRKYVEDEMARLPDRLSVTWPEGDELVPNEVRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRSLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVP
FNIPLEFQDEFGHTTQLLSDIQPVLEASGLSLHYEEITKGPNCVIQGVIAKGPVNSCQGK
NFNLKVILPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVVDESDNI
TAQPKLIVHCKFLGAPNLPVYTVDCSSSGTSILTGSPIQVQNIKKDQTLTARIEIPSCKD
VSPVEKTIKLLPSSHVACLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGERE
INITPSLAEKIKVNWTPEVNKEHLVQGLLPDVQVPTSVKDVRYCQVSFQDDHVSLESAFT
VRPLPDDPKHLKCVLKGGKTVQMGQELQGEIVVIIVDQYGNQISAFSSDSLSTLSISGDG
LDSKNLKTTLETSTQSISVQGIRFTPGPPGPKDLCFTWREFSDFIRVHLISGPPTKLLLI
DWPELKESIPVINGRQLQNPLIVQLCDQWDNPALVPNVKICLIKASSLKLVPSNQQHKTD
DKGRANLGMFTVFAPRGEHTVQVKGVYNKSTIEGPTIKLMILPDPEKPIRLNVKYDKDAS
FIAGDIFTDFMVSVISEGGSVIKNINPTRISMKMWKLSSGMSRPPANAEIFSCNKIKDND
KEDGCFYFREKTIPCKVGAYCIQFDFMIDKTNMLSSEQVIVDVLPNQPMKLVPDTQPATP
AVSNVRSIASRTLVKDLRLSITDNYGNHTGMDLVGTVVATIKGFNEEDTDTPLFIGKVRT
LEFPFVNGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTLSSTLESYSLPFMFYNDVKKQ
QQMAALTKEKDELSKSITMYRSLFDANKQLLDEMKCQAEEAKFKETQLRNELKAHNIDIP
ATQQIPHIEALLEKKIAEQNELKKRPRRLCTLPNYTKRSGDILGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARCIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHFRNGKLH
FKPFGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCVDLGKQIDLIQQYRNALCKLN
SVRADLDHQLQYLHTPDMKRKKQELDEQEKSLKRIEQKLGMTPMRRCSDSLCLSPKIEVT
ECPIPTKRMRRESIRQNRRPKGDVPN
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggagggcgccaaggatccaggcggcctctccaaggggtctggaagggatggc
gacatcgacggctgtaggacggtgtacttgtttgaccggcgcgggaaggactcggagctc
ggggatagagcactgcaggtcccggagcgcgcgggctacgcggagttccgcgcgtctgtg
tgtcagacaattggcatttcatctgaagaaaagtttgttattacaactacaagtaggaaa
gaaattacctgcgataattttgacgacactgttaaagatggagtcactctgtacctgctg
cagtcagttgaccagtcgctactgacagcaacaaaagaaagaattgactttgtacctcac
tatgacactctggttaaaagtggcatgtatgagtactatgcaagtgaagggcagaaccct
ttgccatttgctcttgcagaattaatcgacaattcattgtcagctacttctcgaaatgtt
ggtgttaggagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtc
gcagtagtggataatggaagaggaatgacttctaaacagcttaacaactgggctgtgtac
aggctgtcaaaattcacaagacaaggtgactttgaaagtgatcactcaggatatgtccgg
ccagtaccagtaccacgaagtttgaacagtgatatttcctattttggtgttggaggcaaa
caggctgttttctttgttgggcaatcagccagaatgataagcaaacctatagactccaag
gatgtccatgagctcgtgctttctaaagaagattttgagaagaaggagaaaaacaaagag
gcaatatatagtggatacattagaaacagaaagccagctgattctgttcatattacaaat
gatgatgaaagattcctacacaatcttattgtagaggagaaagagaaagatagctttact
gctgtggttattacaggggtacaaccagaacacatacagtacttgaaaaattactttcat
ctttggacacgacagctaacgcatatttatcattactatattcatggaccaaaaggaaat
gaaataagtacagcaaaagatgttggacctttcaacaacattgatattgaaatttcttta
tttgaaaaagggaagacacctaagattgtcaacctaagggaaatacaagatgacatgcag
acattgtatataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagac
ggtgtagtggaaggtgttatccggtatcatcccttcttatatgatagagaaacttaccct
gatgatccatgctttccatcaaagttaagagatgaagatgacgatgatgactgcttcata
cctgagaaagcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggtta
attccatatacatcggttgaagacttcgactggtgtgctcctcctaagaagagagggctt
gccccgattgagtgctttaatagaatatctggtgcattattcactaatgacaaatttcag
gtcagcacaaataaactgacatttatggatcttgagctgaaattgaaagataagaacacc
ctttttacaagaattttaaatggacaggagcagagaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagcacgacaaacaaataaaattcacactttttaaa
ggaataattacccgtccggatcttcccagtaaaaagcaaggtccctgggcgacattctca
gccatagagtgggacgggaagatatacaaagcaggccaactggtgaagacaatcaagacc
cttcctctcttttatggaagcattgtaaggtttttccttcatggcgatcatgatggagaa
gtgtacgctacaggaggtgaagttcagattgcgatggaaccccaggcactatatgatgaa
ataaaaactgtgcccattgcaaagctggataggacagtagctgagaaaacaattagaaaa
tatgtagaagatgaaatggcaaggctccctgatagattgtctgtaacttggcctgaagga
gatgaattagtgccaaacgaagtcagacctgctggaacacctattggggcactaagaatt
gagattctgaacaaaaagggggaggcaatgcagaagctgccagggacaagtcacggaggc
tccaagaagctgctggtcgaactcaaagttatactacacacttcaagtggaaataaagaa
atcatttcacatatcagtcaacatggagggaaatggccttactggtttaaaaaaatggag
aatatccagaaactgggaaattacacattaaaattacaagtggtattgaatgaaagtaat
gcagatacctatgcaggaagatcactaccatctaaagcaattaagttttctgttaaagag
ggcaagccagaaaagttttcgtttggtcttctggactctcctttccgtgttggagttcca
tttaacattcctctggagttccaggatgaatttggtcacactacccaactactatctgat
attcagccagttcttgaagcaagtggtctgtctttacattatgaagaaataaccaaaggc
ccaaattgtgtaattcaaggtgtcatagctaagggtccagtaaactcttgtcaaggcaag
aattttaatctgaaggttattcttccgggtttaaaagaagactcacagattttgaaaatt
agattgttacctggtccccctcatcgactaaaagtgaaacctgactcagaaattctagtt
attgagaatggaacagctttcccttttcaggtggaagttgtggatgagtcagacaacata
acagcacaaccaaagctgattgtccactgtaagttcctcggtgctccaaacctaccagtc
tacactgtggattgcagcagctctggaacgagcatcctgacagggtcaccaatccaagtg
cagaacattaagaaagaccagacactgaccgccaggattgagatacctagctgtaaagat
gtgtcacctgttgaaaagactatcaagttacttcctagtagccatgttgcttgcctacaa
atctttagtgtagagggacaaaaagcaatccagattaaacatcaggatgaggttaattgg
atagcaggtgatgtaatgcgcaatctgatttttcaaatgtatgatgaaggagaaagagaa
atcaatattacaccatccttggcagaaaaaattaaggttaattggactcctgaggttaac
aaagaacatttggtacaaggtctgcttcctgatgtacaagtaccaacatctgtgaaagat
gtacgctactgccaggtttctttccaagatgaccatgtgtctctggaaagtgcctttaca
gtaagaccacttcctgatgatcccaaacatttaaaatgtgtgttaaaaggaggaaaaaca
gtgcagatgggccaagagcttcaaggagaaatagttgtaataattgtagatcagtatgga
aatcagatttcagcattctcatctgattccttatctactttgtcaatctctggagatggg
cttgacagcaaaaacctgaaaaccactttggagaccagcacacagagtatcagcgtacag
ggcatcagatttaccccaggtcctcctggacccaaggatctttgttttacctggcgagag
ttttctgacttcattcgagtgcatcttatttctggacctccaaccaagctgctgcttatt
gactggccagagctgaaagagtccattccggtgattaatggaagacaattacagaaccct
cttattgttcaactttgtgatcagtgggataatcctgctttagttccaaatgttaaaata
tgtctcataaaagcaagcagtttaaagctagtaccttcaaaccagcagcataaaacagat
gataagggcagagctaatttggggatgttcactgtttttgctccaaggggagaacacact
gtacaggttaaaggtgtctataataagagtactatagaaggacctacaattaagttaatg
attcttccagaccctgaaaaacccattcgtctgaatgttaaatatgacaaagatgcctct
tttatagcaggggacatatttactgattttatggttagtgtgatttctgaaggtggtagt
gtcatcaagaatattaatccaacacgtatttccatgaaaatgtggaagctgtccagtggc
atgagccggccaccagcaaacgcagaaatctttagttgtaataaaataaaagataacgac
aaggaagatggctgcttctatttcagggagaaaaccattccttgcaaggtgggggcgtac
tgtattcagtttgatttcatgatcgataaaactaatatgctcagcagtgaacaggttata
gttgatgttctgcctaatcagcctatgaagttggttcctgatacccagccagctacccca
gccgtttctaatgttcgctccattgccagcaggaccttggtcaaagacctacgcctcagt
attacagataattatggtaatcatactggaatggatctggttggcactgtagtagcaacc
attaaaggctttaatgaggaggacactgataccccactctttatcgggaaggttaggacg
cttgagtttccctttgtgaatggttctgctgaaatcacgactctagtgctggcagaaaat
agtcctggaagggatagtactgaatattttattatctttgagcctcggctgtcaacttta
tcatcaacattagaatcctatagcctgccatttatgttttacaatgatgttaaaaagcag
caacaaatggcagcgcttacgaaggaaaaggatgagctatctaagtccatcactatgtac
agaagtctctttgatgccaacaagcagcttctggatgaaatgaaatgccaagctgaagaa
gcaaaatttaaagagacccagctacgaaatgaactaaaagcacacaatattgatattcct
gcaacacaacagatacctcacattgaagcacttttggaaaaaaagatagcagaacagaat
gagcttaaaaagaggcccagaagattgtgtactcttccaaactacactaaacgcagtgga
gatattttgggaaagattgcacatctagcacagattgaagatgaccgagccgccatggtt
atttcttggcatctagcaagtgacatggactgtgtggttaccctgaccaccgatgctgct
cgctgcatctacgatgagactcaaggtcgccagcaagtgttgcccctcgattctatctac
aggaaaactcttccagattggaaaagacctctacctcatttccgaaatggtaaattacat
tttaagccctttggtgatccagtctttgcccgagatttgttaacattcccagataatatt
gaacattgtgaaacagtttttggtatgctgttaggagacaccattattttggataaccta
gatgcagccaatcattatagaaaagaggttgttaaaatcacgcactgtcccacactcctg
actagagatggagataggattagaagtaatgggaagtttgggggccttcagaataaagcc
ccaccaatggacaaactccggggaatggtctttggagctccagtaccaaagcagtgtgtg
gacttggggaagcagatagatcttattcagcagtatcgaaatgctctgtgcaagctgaac
tccgtgagggcggacttggaccatcagctgcagtacctccacacacccgacatgaagagg
aagaagcaggagctcgatgagcaggaaaaaagcctgaagcgaatcgagcagaagctcgga
atgactcctatgcgcaggtgtagtgactcactttgtctatcaccaaagattgaggtgact
gagtgtccaatccccactaaaagaatgagaagagaatccatcagacagaatagaagacca
aaaggtgatgtccccaactga
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