Rattus norvegicus (rat): 360557
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Entry
360557 CDS
T01003
Symbol
Nlrp1a
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1a allele 1
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
360557 (Nlrp1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
360557 (Nlrp1a)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rno04054
]
360557 (Nlrp1a)
Membrane trafficking [BR:
rno04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
360557 (Nlrp1a)
Pattern recognition receptors [BR:
rno04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
360557 (Nlrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FIIND
NACHT
NLRC4_HD2
CARD
NOD2_WH
LRR_6
AAA_16
NB-ARC
AAA_22
nSTAND3
AAA_30
Zeta_toxin
AAA_14
LRR_1
Motif
Other DBs
NCBI-GeneID:
360557
NCBI-ProteinID:
NP_001139227
RGD:
1310963
Ensembl:
ENSRNOG00000023143
UniProt:
D9I2F9
Structure
PDB
LinkDB
All DBs
Position
10:complement(56277134..56332229)
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AA seq
1218 aa
AA seq
DB search
MEESQSKQESNTRVAQHGSQQDVDPTFQTKRALEKERSKPRPRPLPRVQLQSLPGWSSTS
NDVPLSQLIREMDHESRRCIHRSKKKLDRSEHISQGTIPEIYEKRKETISHTQSMEQKYL
FQNFTKLLLLQKCCPGGSEKLVRESWHPCVPEEGGHMIEIQDLFDPNLDTEKKPQLVIIE
GAAGIGKSTLARQVKRAWDEGQLYRDRFQHVFFFSCRELAQCKQLSLAELIAQGQEVPTA
PTRQILSRPEKLLFILDGIDEPAWVLEDQNPELCVHWSQAQPVHTLLGSLLGKSILPEAS
LMLTARTTALQKLVPSLGQPHRVEVLGFSEFERKDYFYKYFAKERNTIIDFNLIGSIPVL
LTLCEVPWVCWLLCTCLEKQMQQGEVLSLTSQTTTALCLKYLSLTIPGQHLSTQLRTLCS
LAAEGICQRRTLFSKSDLCKQGLAEDAIATFLKIGVLQRQPSSLSYSFAHLCLQEFFAAM
SYILEDSEEAHGDMGNDRTVETLVERYGRQNLFEAPTVRFLLGLLNTREMREMENIFACK
FPWETKLKLLQSIIGEPFCQPCHLGLFHCLYENQEEELLTETMLCFPLTASGPNHMEATV
FQTNVKRLVIQTDMELMVVTFCITFSHVRSLRLKGKGQQEYKLTAPAMVLYRWTPISEAS
WKVLFSNLKCTRNLEELDLSGNPLSYSAVRSLCTALRQPGCRLKTLWLVDCGLTSRCCSF
LASMLSAHSRLAELDLRLNDLGDNGVRQLCEGLRNPACNLSILRLDQASLSEQVITELRA
LETKNPKLFISSTWMSHMTMPTENTDGEESLTSSKQQQQQSGDKHMEPLGTDDDFWGPSG
PVSTEVVDRERNLYRVRLPMAGSYHCPSTGLHFVVTRAVTIEIGFCAWSQFLHETPLQHS
HMVAGPLFDIKAEHGAVTAVCLPHFVSLQEGKVDSSLFHVAHFQDHGMVLETPARVEPHF
AVLENPSFSPMGVLLRMIPAVGHFIPITSITLIYYRLYLEDITFHLYLVPNDCTIRKAID
EEELKFQFVRINKPPPVDALYVGSRYIVSSSKEVEILPKELELCYRSPRESQLFSEIYVG
NIGSGINLQLTDKKYMNLIWEALLKPGDLRPALPRMASAPKDAPALLHFVDQHREQLVAR
VTSVDPLLDKLHGLVLSEEDYETVRAEATNQDKMRKLFRGSRSWSWDCKDHFYQALKETH
PHLIMDLLEKSGGVSVRL
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcagtccaagcaggaaagtaacacaagggtggctcagcatggaagccaa
caggatgtggaccccaccttccaaacaaagagagcattggagaaggagcggtcaaaaccc
agaccccggccgcttcctcgggtgcagctccaatcacttcctggatggtccagcacatcc
aatgatgtgccccttagccagctcatccgtgaaatggatcatgagtcaaggagatgcatt
catcgatcaaagaagaaacttgacaggtctgaacatataagccaagggaccattccagaa
atatatgagaagcgaaaagagactatttcccacacacagtccatggaacaaaagtatttg
ttccaaaatttcacaaagctactactcctacaaaaatgttgcccaggaggctcagagaaa
ttggtcagggaaagctggcatccatgtgtaccagaagaaggaggacatatgattgagatc
caagacttatttgacccaaacttagatactgagaaaaagcctcaattagtcataatagag
ggggctgctgggattgggaagtcaacactggccaggcaggtgaagagagcctgggacgaa
ggccagctctacagggatcgcttccagcatgtcttcttcttcagctgcagagagctggcc
cagtgcaagcagctgagtctggctgagctcatagcccaaggccaggaagtgcccacagct
cccaccagacagatcctgtctcgccctgagaagctgctcttcatcctggatggcatagat
gagccagcatgggtcttggaggaccagaatcctgagctgtgtgtgcactggagtcaagca
caacctgtgcacacactgctgggcagtttactaggaaaatccatccttcctgaggcttcc
ttaatgctcacagctcggaccacagctctacagaagcttgttccttccttggggcagcca
catcgagtggaagtcctggggttctctgagtttgaacggaaggactatttctacaaatac
tttgcaaaagaaagaaatacaattatagattttaatttaattggatctatcccagtgctc
ctgaccctatgtgaggtcccctgggtgtgctggttgctgtgcacttgcctggaaaagcag
atgcagcagggtgaagtactctcactgacctcacagaccaccacagccctctgcctgaaa
tacctttccctgacaatcccaggtcagcacctgagcacccagctcaggaccctctgctca
ctggctgctgaggggatctgccaaagaaggaccctgttcagtaaaagtgacctctgtaag
caagggttagcagaggatgccattgccactttcctgaagatcggtgtccttcaaaggcag
cccagctctctgagctacagctttgcccacttgtgtctccaggagttctttgcagcgatg
tcctacatcttggaggatagtgaggaagcacatggggatatgggaaacgacagaactgtg
gaaacactggtagaacggtatggaagacaaaacctgtttgaggcacccactgtgcgcttt
ctacttggtcttttaaatacacgggaaatgagagaaatggaaaatatctttgcctgcaag
tttccttgggagacaaagttgaagttgctacagagcatcataggggagccgttctgtcaa
ccatgtcatctgggtttgttccactgtctctatgaaaaccaggaagaggagctcctgaca
gagacgatgctttgttttcccttaacagcgtcaggtccaaatcacatggaagccacggtg
ttccagacaaacgtgaagcgcctggtgatacagacagacatggagctcatggtggtcact
ttctgcattacgttctctcatgtgaggagtcttcggctgaaggggaaaggacagcaggaa
tataagctaacagcacctgcgatggttctgtacaggtggacaccaatctctgaggccagt
tggaaggttttattctccaatcttaaatgcaccagaaacctggaggagctggacctaagt
ggaaatccactgagctactctgcagtacgcagtctctgtacagcactgagacagcctggc
tgccgactaaagaccttgtggcttgtggactgtggcctcacatccagatgctgctcattc
ctggcctcaatgctcagtgcccactcaaggttggctgaactagacctgcgactgaatgac
cttggtgacaacggtgtgaggcagctgtgtgaggggctcaggaatcctgcctgcaacctc
agcatcctgcggctggaccaggcctctctcagtgagcaggtgattacagagctcagggcc
ctggagacaaagaatccgaagctgttcatctccagcacatggatgtcacacatgacgatg
cccactgaaaacacagatggagaagagagcctgacctcatccaagcagcaacaacaacaa
tcgggagacaaacacatggaacctctggggactgatgatgacttctggggcccttcagga
cctgtgtctactgaggtggttgacagagagaggaacctgtaccgagtgcgattgcccatg
gctggttcctaccactgtcccagcacaggactccactttgtggtgacaagggcagtgaca
atcgagattggattctgtgcctggagccaattcctgcatgagactcccttgcaacacagt
cacatggtggctggacctctgtttgacatcaaggctgagcacggagctgtgactgcagtg
tgcctccctcattttgtgtccctccaagagggaaaggtggacagctccttgttccatgtt
gcccacttccaagaccatgggatggtcctagaaacgccagcaagggtggaaccacatttc
gcagtactggaaaacccaagcttctcccctatgggagttttactgagaatgattcctgct
gtgggacacttcatccccatcacttccatcacattgatctactatcgcctgtatctcgag
gacatcacctttcacctttacctggtccccaatgactgcactattcggaaggccattgat
gaggaagaactgaagtttcagtttgtgcgcataaacaagccacccccagtagatgctctt
tatgttggttcccgctatatcgtgtccagctccaaagaggtggaaattctcccaaaggaa
ctggagctgtgctaccgaagccctcgggaatcccagctcttctctgagatatatgttgga
aacattggttcagggattaatctgcaactaacagacaagaagtatatgaatctcatatgg
gaggccttgctgaaaccaggggacctcagacctgcactgcccaggatggcttcagccccc
aaagatgctcctgccctgctacacttcgtggaccagcatcgggagcagctggtggcccga
gtgacatcagtggaccctctcttggacaagctgcatggtctggtgctgagtgaagaagat
tatgagacagtgagggctgaggccacaaaccaagacaagatgaggaagctcttcaggggc
agccggtcctggagctgggattgcaaagaccatttctaccaagctctgaaggagacccat
cctcacctgatcatggacctccttgagaagtcgggaggggtctctgttagactctga
DBGET
integrated database retrieval system