Rattus norvegicus (rat): 365542 Help Entry 365542            CDS       T01003                                  Symbol RT1-DOb Name (RefSeq) RT1 class II, DO beta isoform 1   KO K06752   MHC class II antigen Organism rno  Rattus norvegicus (rat) Pathway rno04145   Phagosome rno04514   Cell adhesion molecules rno04612   Antigen processing and presentation rno04640   Hematopoietic cell lineage rno04658   Th1 and Th2 cell differentiation rno04659   Th17 cell differentiation rno04672   Intestinal immune network for IgA production rno04940   Type I diabetes mellitus rno05140   Leishmaniasis rno05145   Toxoplasmosis rno05150   Staphylococcus aureus infection rno05152   Tuberculosis rno05164   Influenza A rno05166   Human T-cell leukemia virus 1 infection rno05168   Herpes simplex virus 1 infection rno05169   Epstein-Barr virus infection rno05310   Asthma rno05320   Autoimmune thyroid disease rno05321   Inflammatory bowel disease rno05322   Systemic lupus erythematosus rno05323   Rheumatoid arthritis rno05330   Allograft rejection rno05332   Graft-versus-host disease rno05416   Viral myocarditis Brite KEGG Orthology (KO) [BR:rno00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04514 Cell adhesion molecules     365542 (RT1-DOb)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     365542 (RT1-DOb)  09150 Organismal Systems   09151 Immune system    04640 Hematopoietic cell lineage     365542 (RT1-DOb)    04612 Antigen processing and presentation     365542 (RT1-DOb)    04658 Th1 and Th2 cell differentiation     365542 (RT1-DOb)    04659 Th17 cell differentiation     365542 (RT1-DOb)    04672 Intestinal immune network for IgA production     365542 (RT1-DOb)  09160 Human Diseases   09172 Infectious disease: viral    05166 Human T-cell leukemia virus 1 infection     365542 (RT1-DOb)    05164 Influenza A     365542 (RT1-DOb)    05168 Herpes simplex virus 1 infection     365542 (RT1-DOb)    05169 Epstein-Barr virus infection     365542 (RT1-DOb)   09171 Infectious disease: bacterial    05150 Staphylococcus aureus infection     365542 (RT1-DOb)    05152 Tuberculosis     365542 (RT1-DOb)   09174 Infectious disease: parasitic    05145 Toxoplasmosis     365542 (RT1-DOb)    05140 Leishmaniasis     365542 (RT1-DOb)   09163 Immune disease    05310 Asthma     365542 (RT1-DOb)    05322 Systemic lupus erythematosus     365542 (RT1-DOb)    05323 Rheumatoid arthritis     365542 (RT1-DOb)    05320 Autoimmune thyroid disease     365542 (RT1-DOb)    05321 Inflammatory bowel disease     365542 (RT1-DOb)    05330 Allograft rejection     365542 (RT1-DOb)    05332 Graft-versus-host disease     365542 (RT1-DOb)   09166 Cardiovascular disease    05416 Viral myocarditis     365542 (RT1-DOb)   09167 Endocrine and metabolic disease    04940 Type I diabetes mellitus     365542 (RT1-DOb)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:rno04147]     365542 (RT1-DOb) Exosome [BR:rno04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    365542 (RT1-DOb)   Exosomal proteins of epithelial cells    365542 (RT1-DOb)   Exosomal proteins of breast milk    365542 (RT1-DOb) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  MHC_II_beta C1-set Ig_3 DUF7550 MHC_I Motif Other DBs NCBI-GeneID:  365542 NCBI-ProteinID:  NP_001008846 RGD:  1595814 Ensembl:  ENSRNOG00000000454 Vega:  OTTRNOG00000001673 UniProt:  Q6MGA2 A0A023ILQ6 LinkDB All DBs Position 20:complement(4621336..4627537) Genome browser AA seq 272 aa AA seqDB search MGAGRAPWVVALLVNLMRPDSFMVEGRDSPEDFVIQAKAECYFTNGTEKVRFLVRFIFNL EEYLHFDSDLGFFVALTELGEVDADQWNKRLDLLETSRAAVNMVCRQEYKLGAPFTVERN VPPEVTVYPERTPLLQQHNLLLCSVTDFYPGDISVRWFRNGQEERSGVMSTGLVRNGDWT FQTTVMLEMIPELGDVYSCLVEHPGLLRPVSVAWVAQSEYSWEKILSGAAAFLLGLTVFL VGAVIHLKAQKASVETQPGNEASRALLPPHPY NT seq 819 nt NT seq  +upstreamnt  +downstreamnt atgggtgctgggagggccccctgggtggtggctctgctagtgaacctcatgaggccagat tccttcatggttgaaggcagagactccccagaggattttgtgattcaggcgaaggcagag tgttacttcaccaacggtacagaaaaggtccgcttcctggtcaggttcatcttcaacctg gaggagtacttacatttcgacagtgacctggggtttttcgtggcactgacggagctgggg gaggtggacgctgatcagtggaacaaacgcctggatctcctggaaacaagtagagctgct gtgaacatggtctgcaggcaagagtacaagctgggggcccccttcaccgtggagagaaat gtgcctccggaggtgacggtgtacccagagaggaccccattgctgcagcagcacaacctg ttgctctgctctgtgacagacttctaccctggggacataagtgtcaggtggttccggaat gggcaggaggagaggtccggggtcatgtccactggccttgttaggaatggagactggacc ttccagacgacggtaatgctggaaatgatcccagagcttggagacgtctacagttgcctt gtggagcaccccggcctcctgagacctgtttctgtggcatgggtggctcagtctgaatat tcctgggaaaagatactgagtggagctgcagcattcctgcttgggctgactgtctttctg gtgggagctgtcatccacctcaaggctcagaaagcgtccgtggagactcagcctggcaat gaggcttcaagggcgcttctcccacctcacccctactaa

DBGET integrated database retrieval system