Rattus norvegicus (rat): 445442
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Entry
445442 CDS
T01003
Symbol
Thbs1
Name
(RefSeq) thrombospondin-1 isoform 1 precursor
KO
K16857
thrombospondin 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04015
Rap1 signaling pathway
rno04115
p53 signaling pathway
rno04145
Phagosome
rno04148
Efferocytosis
rno04151
PI3K-Akt signaling pathway
rno04350
TGF-beta signaling pathway
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04820
Cytoskeleton in muscle cells
rno05144
Malaria
rno05165
Human papillomavirus infection
rno05205
Proteoglycans in cancer
rno05206
MicroRNAs in cancer
rno05219
Bladder cancer
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
445442 (Thbs1)
04350 TGF-beta signaling pathway
445442 (Thbs1)
04151 PI3K-Akt signaling pathway
445442 (Thbs1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
445442 (Thbs1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
445442 (Thbs1)
04148 Efferocytosis
445442 (Thbs1)
09143 Cell growth and death
04115 p53 signaling pathway
445442 (Thbs1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
445442 (Thbs1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
445442 (Thbs1)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
445442 (Thbs1)
05205 Proteoglycans in cancer
445442 (Thbs1)
09162 Cancer: specific types
05219 Bladder cancer
445442 (Thbs1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
445442 (Thbs1)
09174 Infectious disease: parasitic
05144 Malaria
445442 (Thbs1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
445442 (Thbs1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
445442 (Thbs1)
Membrane trafficking [BR:
rno04131
]
Endocytosis
Phagocytosis
Opsonins
445442 (Thbs1)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
445442 (Thbs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
Laminin_G_2
Laminin_G_3
TSP1_CCN
EGF
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
445442
NCBI-ProteinID:
NP_001013080
RGD:
1588455
Ensembl:
ENSRNOG00000045829
UniProt:
Q71SA3
LinkDB
All DBs
Position
3:125510250..125525402
Genome browser
AA seq
1170 aa
AA seq
DB search
MELLRGLGVLFLLHVCGSNRIPESGGDNGVFDIFELIGGARKVPGRRLVKGQDLSSPAFR
IENANLIPPVPDDKFQDLLDAVWADKGFIFLASLRQMKKTRGTLLAVERKDNSGQIFSVV
SNGKAGTLDLSLSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCDKMESAELD
VPIQSIFTRDLANVARLRVAKGDVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTNVLL
TLDNNVVNGSSPAIRTNYIGHKTKDLQAICGLSCDELSSMVLELRGLRTIVTTLQDSIRK
VTEENRELASELRRPPLCFHNGVQYRNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSN
ATVPDGECCPRCWPSDSADDGWSPWSEWTSCSATCGNGIQQRGRSCDSLNNRCEGSSVQT
RTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARE
TKACKKDACPINGGWSPWSLWDICSVTCGGGVQRRSRLCNNPTPQFGGKDCVGDVTENQV
CNKQDCPIDGCLSNPCFAGAKCTSYPDGSWKCGACPPGYSGNGIQCKDVDECKEVPDACF
NHNGEHRCKNTDPGYNCLPCPPRFTGSQPFGRGVEHAMANKQVCKPRNPCTDGTHDCNKN
AKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCPN
LPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYN
HNPDQADTDNNGEGDACAVDIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEH
NPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDN
DGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDHDNVPDIDDICPENVDISETDFRRF
QMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDD
DYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNAL
WHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYD
KTYAGGRLGLFVFSQEMVFFSDMKYECRDS
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggagctcctcaggggactaggcgtcctgttcctgttgcatgtgtgtggaagcaaccgc
attccagagtctgggggagacaatggtgtgttcgacatttttgaactcattggaggtgcc
cgcaaggttccgggtcgccgactggtgaagggccaagatctatccagccccgccttccgg
atcgagaatgccaacctgatcccccctgtgccagatgacaagttccaagacctactggac
gctgtgtgggccgacaaaggcttcatcttcctggcttccttgaggcagatgaagaagact
cggggcacactcctggccgtggaacggaaagacaattctggccagatcttcagtgtggtc
tccaatggcaaagccggcaccctcgatctgagtctgagcctgcccgggaagcagcaagtg
gtgtcagtggaggaagctctcctggccactggccagtggaagagcatcacgctgtttgtc
caagaagacagggcccagctctacattgactgtgacaagatggagagcgcagagctggat
gttcccatccagagcatcttcaccagggatttggccaatgtcgccaggctccgagtcgca
aagggagatgtcaatgacaattttcagggggtgctgcagaatgtgaggtttgtctttgga
accaccccagaagacattctcaggaacaaaggctgctccagttctaccaacgtccttctc
acccttgacaacaacgtggtgaacggttccagccctgccatccgcaccaactacatcggc
cacaaaacaaaggacctccaagccatctgtggcctctcctgtgacgaactatccagcatg
gtcctggaactgaggggcctgcgtaccatcgtgaccacgctacaggacagcattcgaaaa
gtgacggaagagaacagagagctggctagcgagctgaggcggcctcccctctgcttccac
aatggagtccaatacaggaacaacgaggagtggactgtagatagttgcacagagtgtcac
tgccagaactcagttaccatctgcaaaaaggtgtcctgtcccatcatgccctgctccaat
gccacagttcctgatggtgaatgctgcccacggtgctggcccagtgactctgctgacgat
ggctggtctccctggtctgagtggacctcttgctctgccacctgtggcaatgggattcag
caacgtggtcgctcctgtgacagcctcaacaacagatgtgagggctcttcagtacagacg
aggacctgccacattcaggagtgcgacaaaagatttaaacaggatggtggttggagtcac
tggtccccgtggtcgtcctgttctgtgacctgtggtgacggtgtgatcacgaggatccga
ctctgcaactcccccagcccccagatgaacgggaagccctgtgaaggtgaagctcgggag
accaaagcctgcaagaaggacgcctgcccaatcaatggaggctggagtccctggtcacta
tgggacatctgctctgtcacctgtggaggaggagtacagagacgtagccgactctgcaac
aaccccacaccccagtttggaggcaaagactgtgttggtgatgtgacggaaaatcaagtt
tgcaacaagcaggactgtccgattgatggatgcctgtccaatccctgctttgctggtgcc
aagtgtacgagctatcctgatggtagctggaaatgtggtgcgtgtcctcctggctacagt
ggaaatggtatccagtgcaaagacgtcgacgagtgcaaagaagtgcctgatgcttgcttc
aatcacaacggagaacatcggtgcaagaacacagatcctggctacaactgcctgccctgc
ccaccacgattcaccggctcacagcccttcggcagaggtgtcgaacacgctatggccaac
aaacaggtgtgcaaaccccgaaacccctgcaccgacgggacacacgactgcaacaagaac
gccaagtgcaactacctgggtcactacagcgaccccatgtaccgctgtgagtgcaagcct
ggctacgcaggcaatggcatcatttgcggagaggacacagaccttgacggctggcctaat
gaaaacctggtgtgtgtggccaacgcaacttaccactgcaaaaaggacaactgccccaat
cttcccaattcggggcaggaagactatgacaaggatgggattggcgatgcctgtgatgac
gatgatgacaacgacaagattcctgatgacagggacaactgtccattccattacaaccca
gcccagtatgactatgacagagatgatgtgggagaccgctgtgacaattgcccctacaac
cacaaccctgaccaggcagacacagacaacaatggggagggagatgcctgcgctgtggac
atcgatggggatggaatcctcaatgaacgagacaactgccagtatgtttacaacgtggat
cagagggacacggacatggatggggttggagaccagtgtgacaactgccccctggaacac
aatccagaccagctggactctgactcggaccgcataggggacacctgtgacaacaatcag
gacatcgatgaggatggccatcagaacaacctggacaactgtccctatgtgcccaatgcc
aaccaggccgaccacgataaagatggtaaaggagacgcctgtgaccatgacgatgacaac
gacggcatccctgatgacagagacaactgcaggctggtgcccaatcctgaccagaaggac
tctgatggtgatggccgaggcgatgcctgcaaagacgactttgaccatgacaatgtgcca
gacattgatgacatctgtcctgagaatgttgacatcagtgaaaccgatttccgccgattc
cagatgattcctctagatcccaaaggaacctcccaaaatgaccctaactgggttgtccgc
catcagggcaaagaacttgtccagactgtaaactgtgaccctggacttgctgtaggttat
gatgagtttaatgccgtggacttcagtggtaccttcttcatcaacactgagagggatgac
gactatgctggctttgttttcggctaccagtccagcagccgcttctacgttgtgatgtgg
aaacaagtcacccagtcctactgggacaccaaccccacaagggctcagggatactcaggc
ctgtctgtaaaggttgtaaactccaccactggccccggcgagcacctgcggaatgcactg
tggcacacaggaaacacccctggccaggtgcgcaccctgtggcatgaccctcgtcacatt
ggctggaaagatttcactgcatacagatggcgtctcagccacaggccaaagaccggtttt
atcagagtggtgatgtatgaaggaaagaaaatcatggctgactcaggacccatctatgac
aaaacctacgctggcggtagactaggcctgttcgtcttctctcaagaaatggtgttcttc
tcggacatgaaatacgagtgccgagactcctaa
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