Rattus norvegicus (rat): 499400
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Entry
499400 CDS
T01003
Symbol
RT1-M5
Name
(RefSeq) RT1 class Ib, locus M5 isoform 2 precursor
KO
K06751
MHC class I antigen
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04144
Endocytosis
rno04145
Phagosome
rno04218
Cellular senescence
rno04514
Cell adhesion molecules
rno04612
Antigen processing and presentation
rno04940
Type I diabetes mellitus
rno05163
Human cytomegalovirus infection
rno05165
Human papillomavirus infection
rno05166
Human T-cell leukemia virus 1 infection
rno05167
Kaposi sarcoma-associated herpesvirus infection
rno05168
Herpes simplex virus 1 infection
rno05169
Epstein-Barr virus infection
rno05170
Human immunodeficiency virus 1 infection
rno05203
Viral carcinogenesis
rno05320
Autoimmune thyroid disease
rno05330
Allograft rejection
rno05332
Graft-versus-host disease
rno05416
Viral myocarditis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
499400 (RT1-M5)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
499400 (RT1-M5)
04145 Phagosome
499400 (RT1-M5)
09143 Cell growth and death
04218 Cellular senescence
499400 (RT1-M5)
09150 Organismal Systems
09151 Immune system
04650 Natural killer cell mediated cytotoxicity
499400 (RT1-M5)
04612 Antigen processing and presentation
499400 (RT1-M5)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
499400 (RT1-M5)
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
499400 (RT1-M5)
05170 Human immunodeficiency virus 1 infection
499400 (RT1-M5)
05168 Herpes simplex virus 1 infection
499400 (RT1-M5)
05163 Human cytomegalovirus infection
499400 (RT1-M5)
05167 Kaposi sarcoma-associated herpesvirus infection
499400 (RT1-M5)
05169 Epstein-Barr virus infection
499400 (RT1-M5)
05165 Human papillomavirus infection
499400 (RT1-M5)
09163 Immune disease
05320 Autoimmune thyroid disease
499400 (RT1-M5)
05330 Allograft rejection
499400 (RT1-M5)
05332 Graft-versus-host disease
499400 (RT1-M5)
09166 Cardiovascular disease
05416 Viral myocarditis
499400 (RT1-M5)
09167 Endocrine and metabolic disease
04940 Type I diabetes mellitus
499400 (RT1-M5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
499400 (RT1-M5)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rno00537
]
499400 (RT1-M5)
Exosome [BR:
rno04147
]
Exosomal proteins
Proteins found in most exosomes
499400 (RT1-M5)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rno00537
]
Antigens
499400 (RT1-M5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
C2-set_2
Motif
Other DBs
NCBI-GeneID:
499400
NCBI-ProteinID:
NP_001041510
RGD:
1595816
Ensembl:
ENSRNOG00000033136
Vega:
OTTRNOG00000001465
LinkDB
All DBs
Position
20:complement(1551751..1554015)
Genome browser
AA seq
348 aa
AA seq
DB search
MGSSVFSVLLPLLLSRAWALNQVGAGIHSLQFFATAVTQPSSREHSFIFVGFVDDTQFLC
YNNQGESQRMEPRALWVKNMGPGYWERQTRMVKDISKNSLVNLREAMSVYNHSEDGTHVF
QCVSGCDVGPDGLFLRGHEQHAYDGRDYLALNKDLHSWTAGDTAAQITRRKWEEAGVAEQ
RRTYLKGECVESLRTYLEIGKETLLGADPPKAHVTHHPSPEGDNTLRCWALGFYPSDITL
TWQRDGEDLTQDMELVETRPGGDGTFQKWAAVVVPSGEEHRYTCCVEHEGLTEPLLLKWD
PSKHTIPIMGITAGLVFLGVAFTGAVVAIAMRKQRAHLERSDKYLTWT
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgggaagctccgttttctctgtcctcctaccattgctgctcagccgagcttgggcattg
aaccaggtcggcgcaggcatccattccttgcagttttttgccactgctgtgacccagcct
agttcgagggagcattccttcatctttgtcggctttgtggacgacacacagttcctgtgc
tacaacaatcagggggaaagtcagagaatggagccgcgcgctctgtgggtaaagaatatg
gggcccggatattgggagcggcagactaggatggtcaaggacatttccaagaattcccta
gtgaacttgcgggaggccatgagtgtctacaaccacagcgaggatggcactcatgtcttt
cagtgtgtgtctggctgtgacgtggggccagatggactcttcctccgtgggcacgagcag
cacgcatacgacggccgcgactacctcgctctaaacaaggacctgcactcctggacggca
ggtgacacagcagcgcagatcacgcggcgcaagtgggaggaagctggtgtcgcggagcaa
aggcgaacctacctgaagggcgagtgtgtggagtcgctccgcacatacctggagataggg
aaggagactctgctaggagcagatcctccaaaagcacatgtgacccatcaccccagccct
gaaggtgataacaccctgaggtgctgggccctgggcttctacccttctgacatcaccctg
acctggcagcgggatggagaagacctgacccaggacatggagcttgtggagacaagacct
gggggtgatggaaccttccagaagtgggcagctgtggtggtgccttctggggaggagcat
agatacacatgctgtgtggagcatgaggggctaactgagcctctccttctgaaatgggac
ccttctaagcacaccatccccatcatgggaatcactgctggcctggttttccttggagtt
gccttcactggagctgtggttgccatagcgatgaggaagcagagagcacatttggaaaga
agtgacaaatacctcacatggacatga
DBGET
integrated database retrieval system