Rattus norvegicus (rat): 689883
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Entry
689883 CDS
T01003
Symbol
Setdb1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno00310
Lysine degradation
rno01100
Metabolic pathways
rno04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
689883 (Setdb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
689883 (Setdb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
689883 (Setdb1)
Enzymes [BR:
rno01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
689883 (Setdb1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
689883 (Setdb1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
689883 (Setdb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5604
Tudor_4
SET
Tudor_5
MBD
Pre-SET
DUF4537
53-BP1_Tudor
Motif
Other DBs
NCBI-GeneID:
689883
NCBI-ProteinID:
NP_001258104
RGD:
1308370
Ensembl:
ENSRNOG00000021143
LinkDB
All DBs
Position
2:complement(185587722..185619084)
Genome browser
AA seq
1302 aa
AA seq
DB search
MSSLPGCMSLAAAPAAADSAEIAELQQAVVEELGISMEELRQFIDEELEKMDCIQQRKKQ
LAELETWVLQKESEVAYVDRLFDDASREVTNCESLVKDFYSKLGLQYHDSSSDDEASQPT
EIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDL
HKGTLGQVSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGLGKKYKVKFDNKGKS
LLSGNHIAYDYHPPADKLFVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDG
YASYVTQSELYPICRPLKKTWEDIEDSSCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEG
TWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASAMEKKQGGQLRTR
PNMGAVRSKGPVVQYTQDLTSTGIQFKPMEPLQPIVPPAPLPMLPLSPQAGDSESLESQL
AQSRKQVAKKSTSFRPGSVSSGHSSPTSPTLSENVPPGKIGMNQTYRSPSASVTSTPAPA
APSGPPAPPGPLAPPGPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRIRP
MRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFET
GCDFLYLEMFCLDPYVLVDRKFQPFKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYS
KERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTVQATACTPGGQINPSSGYQHK
RLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSF
VCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDVPSSSDSSGVDMKDQ
EDGNSGSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKESELSEVTSKDSR
APDRGPPHVPITPSGSVGGCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSRSSFKTSE
GGDGRAGGGRGEAERASTSGLSFKDEGDSKQSKKEDPEDRNKMSVVTEGSQNHGHNPPMK
SEGLRRPASKISMLQSQRVVTSTQSNPDDILTLSSSTESEGESGTSRKPTTGQTSATAVD
SDDIQTISSGSDGDDFEDKKNLSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASVDKGE
SAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAF
FASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccctccctgggtgcatgagtttggctgcagcgccagctgcggcggactctgca
gagattgctgagctgcagcaggcagtggttgaagagctgggtatctctatggaggaactt
cgtcagttcatcgatgaagaactggaaaagatggactgtatacagcagcgcaagaagcag
ctggcagagctggagacgtgggtgctgcagaaggagtctgaggtggcttatgttgatcgg
ctgtttgatgatgcatctagggaagtgactaattgtgagtctttggtgaaggatttctac
tctaagctgggattacagtatcatgacagtagctctgacgatgaagcttcccagcctaca
gagataatcgagattcctgatgaagatgatgatgtcctcagtattgattcaggtgatgct
gggagcagaacgccaaaagatcagaagcttcgtgaagctatggctgccttaagaaaatca
gctcaagatgtccagaagttcatggatgctgtgaataagaaaagcagttctcaagatcta
cataaaggaaccttgggtcaggtgtctggagaactgagcaaagatggggacctgatagtc
agcatgcggattctgggcaagaagaggactaagacgtggcacaaaggcaccctcattgcc
atccagactgtcgggctaggaaagaaatacaaagtgaaatttgacaacaaaggaaagagt
ctgctgtctgggaaccatattgcctatgattaccaccctcctgctgacaagctgtttgtg
ggcagtcgagtggtggccaaatacaaagatggaaatcaggtctggctttatgctggcatt
gtagctgagacccctaacgtcaagaacaagctcagatttttaattttttttgatgatggc
tatgcttcctatgtcactcagtccgagctgtatcccatttgccgaccattgaaaaagact
tgggaggacatagaagacagctcctgccgagacttcatagaagaatatatcactgcctat
ccaaaccgcccaatggtacttctcaagagtggccagcttattaagactgagtgggaaggc
acatggtggaagtctcgagttgaagaggttgatggcagcctagtcaggatcctctttctg
gatgacaaaagatgtgagtggatctatcgaggctctacacgcctggaacctatgttcagt
atgaagacatcctcagcctctgcaatggagaagaagcaaggggggcaactcagaacccgt
cctaatatgggtgctgtgaggagcaaaggtcctgttgttcagtacactcaggatctaacg
agtactggaatccagtttaagcccatggagcccctgcagcctatagtcccacctgccccg
cttcccatgcttcctctttccccccaggcaggcgacagtgaaagcttagaaagccagctt
gctcaatcacggaagcaagtagccaaaaagagcacatcattccgaccaggatctgtgagt
tctggccattcctcccctacttcgcccacactcagtgaaaatgtaccccctgggaaaatt
ggaatgaaccagacatacagatcaccttcagcctctgtaacatctaccccagcacctgca
gccccttctgggcctccagcccctccagggcctcttgctcctcctggaccaccggcccct
ccagctttccacggcatgttagagcgggcaccagctgagccctcctatcgtgcccctatg
gagaagcttttctatttacctcatgtctgcagttacacttgtttgtcccggattagaccc
atgaggaatgaacaatatcggggcaaaaaccctctactggtcccactattgtatgacttc
cggaggatgacagcacgtcgcagagttaaccgcaagatgggcttccatgtaatctataag
acaccctgtggtctctgccttcggacgatgcaggaaatagagcgctacctttttgagact
ggctgtgacttcctgtacctggagatgttctgtttggatccatatgtccttgttgacaga
aagttccagccctttaaacctttttactatattttggacatcacctatggcaaagaagat
gttcccctgtcctgtgttaatgagattgacacaactcccccaccccaggtggcctacagc
aaggaacgcattcctggcaagggtgttttcattaacacaggccctgaatttctggttggc
tgtgactgcaaggatgggtgtcgggataaatccaagtgtgcctgccatcagctcactgtc
caggccacagcctgtaccccagggggtcagatcaaccctagctccggctaccagcacaaa
agactagaagagtgtctgcccacaggggtttatgagtgtaacaagcgctgcaaatgtgac
ccaaacatgtgcacaaatcggttggtgcagcatggactgcaggttcgactacagctgttt
aagacacagaacaagggctggggcatccgctgcttggatgacattgctaaaggctctttt
gtctgcatttatgcaggcaaaatcctgacagatgactttgcagacaaagaaggcctcgag
atgggtgatgagtactttgcaaatctggaccacattgaaagtgtggagaacttcaaggaa
ggatatgagagtgacgtccccagctcctctgacagcagtggggtggatatgaaggaccag
gaggatggcaacagtggctcagaggaccctgaggagtccaacgacgacagctccgatgac
aacttctgtaaggacgaggacttcagcaccagttcagtgtggcgtagctatgcaacccgg
aggcagactcggggtcagaaggagagtgaactgtctgaggtgacttcaaaggactcccgc
gccccagaccgtgggcctccccacgtccctatcactccctcaggatctgtagggggttgc
aatccaccttcctccgaagagacacccaagaacaaggtggcctcatggttgagctgcaat
agtgtcagtgaaggtggatttgctgactctgacagccgttcctcctttaagactagtgaa
ggtggagatggccgtgctgggggaggccggggagaggctgaaagagcctctacctcagga
ttgagcttcaaggatgaaggagacagtaagcaatctaaaaaagaggaccctgaggaccga
aacaagatgtcagtagttactgaaggctctcagaatcatggacacaatcctcccatgaag
tctgaagggcttcgccgaccagctagtaaaatttctatgctccagagccagcgagttgtg
acttctactcagtcaaaccctgatgatatcctaacactgtccagcagcacagaaagtgag
ggggaaagtggaaccagccgaaagcccactactggtcagacttcagccacagcagttgac
agtgatgacatccagaccatctcttctggctctgatggcgatgactttgaggacaagaag
aacttgtcgggaccaacaaagcgtcaggtggcagtaaaatcaacccgaggctttgctctt
aaatcaacccatggtattgccattaaatcaaccaacatggcttccgtggacaagggggag
agtgcaccagttcgtaagaacacacgccagttctatgatggtgaagagtcttgctacatc
attgatgccaaacttgaaggcaacctaggccgctacctcaatcacagttgcagccccaac
ctgtttgtccagaacgtttttgtggatacccatgatcttcgcttcccttgggtggccttt
tttgccagcaagagaatccgggctggaacagaactcacttgggattacaactatgaagtg
ggcagtgtggaaggcaaggaactgctgtgctgctgtggagccattgaatgcagagggcgg
cttctctag
DBGET
integrated database retrieval system