Rattus norvegicus (rat): 691998
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Entry
691998 CDS
T01003
Symbol
Nlrp1b
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1b allele 3-like
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
691998 (Nlrp1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
691998 (Nlrp1b)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rno04054
]
691998 (Nlrp1b)
Membrane trafficking [BR:
rno04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
691998 (Nlrp1b)
Pattern recognition receptors [BR:
rno04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
691998 (Nlrp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
FIIND
UPA-FIIND
NLRC4_HD2
CARD
NOD2_WH
AAA_16
LRR_6
NPHP3_N
NB-ARC
AAA_22
AAA_30
nSTAND3
AAA_14
Zeta_toxin
LRR_1
Motif
Other DBs
NCBI-GeneID:
691998
NCBI-ProteinID:
XP_063126103
RGD:
1593294
Ensembl:
ENSRNOG00000048125
LinkDB
All DBs
Position
10:complement(56336957..56412796)
Genome browser
AA seq
1120 aa
AA seq
DB search
MKQKGENIHSTQPLKRENVFRNFTNLLLFRKFCPRDSEKLVRKSWHSCVPEEGGHMIEIQ
DLFDPNSDTEKRPQLVIVEGAAGIGKSTLARQVRRAWKEGQLYRDRFQHVFFFSCRELAQ
CKQLSLAELIAQGQEVPTAPIRQILSRPKKLLFILDGIDEPAWVLEDQNPELCVHWSQAQ
PVHTLLGSLLGKSILPEASLMLTARTTALQKIIPSLGQPNQVQVLGFTEVERENYFYRYF
AKQRVAMTAHMKLQSNPVLQTLCEVPWVCWLVCACLEKQMQQGEVLSLTSQTTTALCLKY
LSLTIPGQHLSTQLRTLCSLAAEGICQRRTLFSKSDLCKQGLARNAINTFLEIGVLQRQP
SSLSYSFAHLCLQEFFAAMSYILEDSEERHGDMGNDRTVETLVERYGRQNLFEAPTVRFL
FGLLSEEGLKEMEKFFSCNLLRKTKLELLWHILAKFQSHQPHSLGFLRCLYENQETQLLS
HVMHDLQGIIVPDTNDRAHSVIQTNVKHLVIQTDMELMVVTFCIQFCYHVRSLQVNMERQ
QGYELTAPRMVLHRWTPITDASWKILFSNLKFTRNLEELDLSGNPLSYSAVCSLCKALKQ
PDCQLKSLWLVECGLTSRCCSLLAEVLSAHSRLTELDLQVNDLGDNGVRLLCKGLRSPAC
NLSILRLDQASLSDQVIMELRDLEAKNPKLRISSTWMPHMMVPTENMDGEDIMDSFKQQR
QQSRETLMETLGTEDDFWGPSGPVSTEVVDRERNLYRVQLPMAGVYHCPSTGLHFVVTRA
VTIQIEFCAWSQFLDKTPLQHRYMVAGPLFDIKAEQGAVTAVYLPHFVSIQDPKASTFDF
KVAHFQEHGAVLETPVRVKHRYAALKNPSFSPLGVVLRIIPAARRFIPITSITLIYYHLS
LEEVTLHLYLIPNDCTIQKAIDEEEKKFQFVRIHKPPPVDSLYIGSRYIVSGSEKLEITP
KELELCYRSSKEFQLFSEIYVGHMGSEIKLQIKDKKHTQLIWEALLKPGDLRPALPRIAP
ATKDAPALLHFMDQHREQLVARVTSVDPLLDKLHSLVLSEDSYEAVRAETTNQDKMRKLL
SLSRAWSRAGKDQFYNALKETHPHLVMDLLEMSGGVSLRY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaaaggggagaatattcactccactcagccattgaaaagggagaatgtgttc
cgaaattttacaaacctactactcttccgaaaattttgcccaagagattcagagaaattg
gtcaggaaaagctggcattcatgtgtaccagaagaaggaggacatatgattgagatccaa
gacttatttgacccaaattcagatactgagaaaagacctcaattagtcatagtagagggg
gctgctgggattgggaagtcaacactggccaggcaggtgaggagagcctggaaggagggc
cagctctacagggatcgcttccagcatgtcttcttcttcagctgcagagagctggcccag
tgcaagcagctgagtctggctgagctcatagcacaaggccaggaagtgcccacagctccc
atcagacagatcctgtctcgccctaagaagctgctcttcatcctggatggcatagatgag
ccagcatgggtcttggaggaccagaatcctgagctgtgtgtgcactggagtcaagcacaa
cctgtgcacacactcctggggagtttgctggggaaatccatccttcctgaggcttcctta
atgctcacagctcggaccacagctctacaaaaaatcattccttctctggggcagccaaat
caagttcaagtcctaggattcactgaggttgaacgggagaactatttctacagatatttt
gcaaagcaaagagttgcaatgaccgctcatatgaagcttcaatctaacccagtgcttcag
accctgtgtgaggtcccctgggtgtgctggttggtctgcgcttgcctggaaaagcagatg
cagcagggtgaagtactctcactgacctcacagaccaccacagccctctgcctgaaatac
ctttccctgacaattccaggtcagcacctgagcacccagcttaggaccctctgttcactg
gctgctgaggggatctgccaaagaaggaccctgttcagtaaaagtgacctctgtaagcaa
gggttagcaaggaatgccattaacactttcctggagatcggtgtccttcaaaggcagccc
agctctctgagctacagctttgcccacttgtgtctccaggagttctttgcagcgatgtcc
tacatcttggaggatagtgaggaaagacatggggatatgggaaacgacagaactgtggaa
acactggtagaacggtatggaagacaaaacctgtttgaggcacccactgtgcgctttcta
tttggtcttttgagtgaagagggattgaaagaaatggaaaagttcttttcctgcaacctt
cttaggaagacaaagttggaattactatggcacatccttgcaaaattccaatcccatcaa
ccgcattctctgggttttctacgctgtctgtatgaaaatcaggaaacgcagctcctatca
cacgtgatgcatgatcttcaaggaataatagtgcctgacacaaatgatagggcacactca
gtgatccagacaaatgtgaagcacttggtgatacagacagacatggagctcatggtggtc
actttctgtattcagttctgctatcatgtgaggagccttcaggtgaatatggaaagacag
caaggatatgagttgacagccccaaggatggttctgcacaggtggaccccaatcactgat
gccagttggaagattttattctccaatcttaaattcaccagaaacctggaggagctggac
ctaagtggaaatccactgagctactctgcagtatgcagtctctgtaaggccctgaaacag
cctgactgccaactaaagagcttgtggcttgttgaatgtggcctcacatccagatgctgt
tcactcctggccgaagtgctcagtgcccactccaggctgactgagctagacctgcaggtg
aatgacctgggtgacaatggtgtgaggctgctgtgtaagggactcaggagtcctgcctgc
aacctcagcatcctgcggttggaccaggcctctctcagtgaccaggtgattatggagctc
agagacttggaggcaaagaatccaaagctacgaatctccagcacatggatgccacacatg
atggtccccactgagaacatggatggagaagatatcatggactcattcaaacagcagaga
caacagtcaagagagacactcatggaaactctgggaactgaagatgacttctggggccct
tcaggacctgtgtctactgaggtggttgacagagagaggaacctgtaccgagtgcaattg
cccatggctggtgtctaccactgtcccagcacaggactacactttgtggtgacaagggca
gtgacaatacagatcgaattctgtgcctggagtcaattcctggacaagactcccttacaa
cacagatacatggtagctggacctctgtttgacatcaaggctgagcaaggagctgtgact
gctgtgtacctccctcattttgtgtccatccaagacccaaaggcaagcacatttgacttc
aaggtggcccactttcaagaacatggggcggttctagaaacgccagttagggtgaagcat
cgctatgcagcactgaaaaacccaagcttctcgccattaggagttgtgctgagaataatc
cctgctgcccggcgcttcatccccatcacttccatcacactgatctactatcacctcagt
cttgaagaggtcacccttcacctctacctcatccccaatgactgcaccattcagaaggcc
attgatgaggaagaaaagaagtttcagttcgtgagaatacacaagccacccccagtagat
agcctgtacatcggctcccgctacatcgtgtctggttctgagaagctggaaatcaccccg
aaggaactggagctatgctacaggagcagcaaggaattccagctcttctctgagatctat
gttggacacatgggttcagagattaagctgcaaatcaaagacaagaagcacacgcaactc
atatgggaggccttgctgaaaccaggagacctcagacctgcactgcccaggattgctcca
gccacaaaagatgctcctgccctgctacacttcatggaccagcatcgggagcagctggtg
gcccgagtgacatcagtggaccctctcttggacaagctgcatagtctggtgctgagtgaa
gattcctatgaggcagtgagggctgaaaccacaaaccaagacaagatgaggaagctgtta
agcctcagccgggcctggagtcgagccggcaaagaccaattctacaacgctctgaaggag
acccatcctcacctggtcatggatctgcttgagatgtcgggtggagtctctttgagatac
tga
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integrated database retrieval system
