Romboutsia sp. CE17: HF520_14660
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Entry
HF520_14660 CDS
T06535
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03030
DNA replication
roc03410
Base excision repair
roc03420
Nucleotide excision repair
roc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF520_14660 (ligA)
03410 Base excision repair
HF520_14660 (ligA)
03420 Nucleotide excision repair
HF520_14660 (ligA)
03430 Mismatch repair
HF520_14660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
roc03032
]
HF520_14660 (ligA)
03400 DNA repair and recombination proteins [BR:
roc03400
]
HF520_14660 (ligA)
Enzymes [BR:
roc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HF520_14660 (ligA)
DNA replication proteins [BR:
roc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF520_14660 (ligA)
DNA repair and recombination proteins [BR:
roc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HF520_14660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF520_14660 (ligA)
MMR (mismatch excision repair)
DNA ligase
HF520_14660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF520_14660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH_5
Zn_Ribbon_TF
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QJA10024
LinkDB
All DBs
Position
3016700..3018691
Genome browser
AA seq
663 aa
AA seq
DB search
MDAKSRIEELRKEIEYHNNRYYNEDSPEISDYEYDKLTIELRKLEEEYPELSTEDSPTKK
VGGTVKRELRKVEHDVPVISLQDVFKKEEVYDYVNKMVVELNNPKFVVEKKIDGLSVVLR
YHNGELTEGITRGDGVVGESVYENLLEIKNVPKTIPAKLPYLEVRGEVYISNQAFEEANK
KQEAIGGKKYQNPRNLAAGTLRQLDPSVVRDRNLDIFVFNLEISEGKEFKSHSETLEWLK
EQGFKVSPDFKVCETVDEVWDYISKVGEERWNLEYAIDGAVVKVDNLEDRKKLGMTSKVP
RWAVAYKYPPEQKETIVKDIIIQVGRTGRLTPLAILEPVRLAGTTVSKATLHNQDVINEK
DVRIGDTVIVQKAGDIIPEVIKSIPEKRPVNSNPYVIPNVCPICGEPTVRDENGADTRCI
NPECDAQATRSISYFVSKDAMNIVGFGKSKVEALMAEGYIKDIGDIYQLKNYKDEILEKN
IIGRDKSVNNLLNAIEESKNNNIDKLITGLGIKNVGKQSAKVLAENFNNMDEVASAEYDQ
LINLPDFGDTMVNDIIKYFRSEKYHTIISKLKEHGVNVISTSSDTKEDNRFEGMTFVITG
TLPTMKRDEASSIIQSFGGKVSGSVSKKTSYVLAGEEAGSKLTKAQALGITVIDEDKFKE
MIK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggatgctaaatctagaatagaagaactgcgtaaagaaatagaatatcataataataga
tattataatgaggattcacctgaaatttcagattatgaatatgataaattaacaattgaa
ttgagaaaattagaagaagaatatccagagcttagtacggaagattctcctactaaaaaa
gttggaggtacagtaaaaagagaattaagaaaagtagaacatgatgtaccggtaattagt
ttacaagatgttttcaaaaaagaagaagtatatgactatgtaaataaaatggtcgttgaa
ctaaataatcctaaatttgtagttgaaaagaagatagatggtctttcagtagttttaaga
tatcataatggagagctaacagaaggtataaccagaggtgatggtgttgtaggtgagtct
gtatatgaaaatttacttgagataaaaaatgttcctaagactatacctgcaaaactacca
tacttggaagtacgtggagaagtatatatatcaaatcaagcttttgaagaagcaaataaa
aagcaagaagctatcggtggtaaaaagtatcaaaatcctagaaaccttgcggcaggtact
ttaagacaactagatccatcagtagttagagatagaaatcttgatatatttgtattcaac
cttgaaatatctgaaggtaaagaatttaaatcacactcagaaactctagagtggttaaag
gaacaaggatttaaagttagtccagattttaaggtatgtgaaacagtagatgaagtatgg
gattacatatctaaagttggagaagaaagatggaatttagaatatgctatagatggtgca
gttgtaaaagtggataatttagaagatagaaaaaagttaggtatgacaagtaaagttcca
agatgggcggttgcatataagtatccaccagaacaaaaagaaacaatagtaaaagatata
attatacaagtaggtcgtacaggaagattaacacctttagctattttagaaccagttaga
ttagcaggaacaacagtatctaaggcaactttacataatcaagatgtaatcaatgaaaag
gatgtaaggataggagatacagtaatagttcaaaaagctggagatataataccagaggtt
ataaaaagtataccagaaaaaagacctgtaaattccaatccttatgtaataccaaatgtg
tgcccaatttgtggtgaaccaacagttagggatgaaaatggagcagatactcgttgtata
aatccagaatgtgatgctcaagcaactagaagtatatcttattttgtatctaaagacgca
atgaatatagtaggatttggtaaaagtaaagttgaagcccttatggctgaaggttatata
aaagatataggtgatatatatcaacttaaaaattataaagatgaaattttagaaaaaaat
attataggtagagataaatcagtaaataatcttcttaacgctatagaggaatcaaaaaat
aataatatagataagttgataacaggtcttggaataaaaaatgtagggaagcaatcagct
aaagtattggcagagaactttaataatatggacgaagttgcaagtgcagagtatgatcaa
ttaataaatttaccagactttggagatacaatggtaaatgatataataaaatattttaga
agtgaaaaatatcatactataatttctaagttaaaagagcatggagttaatgttatttca
acatcttctgatacaaaagaagataatagatttgaaggaatgacttttgtaataacagga
actttaccaacaatgaagagagatgaagcatcttctataattcaatcgtttggtggaaaa
gtatcaggtagtgtttctaaaaaaacaagctatgttttggcaggagaagaagcaggaagt
aagcttacaaaagcgcaagcactaggtataactgtaatagatgaagataaatttaaagaa
atgattaagtaa
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