Rossellomorea sp. DA94: P8596_01865
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Entry
P8596_01865 CDS
T10138
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rod Rossellomorea sp. DA94
Pathway
rod03030
DNA replication
rod03410
Base excision repair
rod03420
Nucleotide excision repair
rod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P8596_01865 (ligA)
03410 Base excision repair
P8596_01865 (ligA)
03420 Nucleotide excision repair
P8596_01865 (ligA)
03430 Mismatch repair
P8596_01865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rod03032
]
P8596_01865 (ligA)
03400 DNA repair and recombination proteins [BR:
rod03400
]
P8596_01865 (ligA)
Enzymes [BR:
rod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P8596_01865 (ligA)
DNA replication proteins [BR:
rod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P8596_01865 (ligA)
DNA repair and recombination proteins [BR:
rod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P8596_01865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P8596_01865 (ligA)
MMR (mismatch excision repair)
DNA ligase
P8596_01865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P8596_01865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
BRCT_2
RNA_pol_A_CTD
5_3_exonuc
Spectrin
DnaG_cat_HB
Motif
Other DBs
NCBI-ProteinID:
WGG45989
LinkDB
All DBs
Position
341896..343902
Genome browser
AA seq
668 aa
AA seq
DB search
MNRQSAEKRINELHERLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQFPELKSADSP
SQRVGGTILDSFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQAVGEDFSYVCELKIDGLA
VSLRYEDGAFVQGATRGDGSIGEDITSNLKTIRSIPLKISEKMSFEVRGEAFMPKGSFEA
LNKIKEEKGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADIGDTGIDSHSEGLD
TLDKLGFKTNPERKRCATIEEVLEFVGKWTDERPNLSYDIDGIVIKVDSLDQQQELGTTA
KSPRWAIAFKFPAEEVVTVLKEIELSVGRTGVVTPTAILEPVRVAGTTVQRASLHNEDLI
REKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGDEQEFLMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFREKLIEDVADLYRLERDQLLQL
ERMGEKSVDNLLEAIQTSKGNSLEKLLFGLGIRHVGAKAAKTLAQEFGSMDRLMDARKEE
LTNVNEIGDKMADAIVAYFENDEVKELMQELKEAGVNLEYKGPKPVSASDVDSYFAGKTI
VLTGKIERLSRNEAKEKIEMLGGKVTGSVSKKTDLVIAGEEAGSKLTKANDLNIEVWDED
KLMEELNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgacaatcagccgaaaagcgtatcaatgaactccacgaacgattgaaccaatat
aattacgaatatcatgtcctcgacaagccctctgtcccggattcagagtatgatcaactc
ctcagagaactcattgaactcgaggaccagtttccggaattaaaatcagcggattcacct
tcccagcgtgtgggtggaaccattcttgattcgttcgaaaaagtcgaacacagaacgccg
atgctgagccttgggaatgcctttaatgaagaagatcttcgtgactttgaccgccgtgtc
cgtcaagcggtcggcgaggacttctcctacgtttgcgagttgaagatcgatggtttggcc
gtttctctcagatatgaagacggggcgttcgtccaaggggctacacggggtgacgggtcc
ataggtgaggacatcacatcgaatctgaagaccatccgttccatcccgttaaagatttca
gaaaaaatgtccttcgaagttcggggagaggcattcatgccgaaaggatccttcgaagca
ctgaataagatcaaagaagaaaaaggggaagaaccctttgccaatccgcgtaacgcagcg
gcaggttcactccgccagctggatccgaaaatcgcggcctcccggaatctcgacattttc
ctgtatgccctggctgatatcggggatacaggaatcgactcccatagcgagggattggac
acgcttgataaactcgggtttaaaacaaacccggaacgcaagcgttgtgcgaccattgaa
gaagtcctcgaatttgtcgggaagtggacagatgaacgtccgaatctatcctatgacatt
gacgggatcgtcattaaggtcgactcccttgatcagcagcaggaactcggaacgactgct
aaaagcccgaggtgggccatcgcgttcaagttccctgccgaagaagtcgtcacggtcctg
aaggaaattgaattaagtgtagggcgcacaggtgtcgtcacaccgactgcgatcctggag
ccggtccgtgtagctggaacgaccgtccaacgtgcctcccttcataatgaagatttgatc
agggagaaagatatcaagatcggtgaccacgtcgtcattaaaaaagcgggggacatcatc
cctgaagtggtgaacgtactggaagacaagagaaccggtgacgaacaggaattcctgatg
ccgactcattgtcctgagtgtgaaagtgaacttgtgagacttgaaggggaagttgccctc
cgctgcattaatccgaaatgtcccgctcaaatccgggaagggctcattcactttgtatcc
cgcaacgccatgaacatcgacggcctgggtgaaaaggtgatcagtcagctgttcagggaa
aaattgattgaagacgtagccgatttatacagacttgagcgcgatcagcttcttcagctg
gaacggatgggcgagaaatccgttgataatttgttggaagccattcaaacgtcgaaaggg
aattctctggagaaactgttattcggtcttggcatccgtcacgtaggagccaaagccgcg
aagacgttggcacaggaattcggctcaatggacaggctgatggacgcccggaaagaagaa
ctgacgaatgtgaatgagatcggggataaaatggccgacgccattgtcgcttactttgaa
aacgatgaagtgaaagaactcatgcaggagctgaaagaggcaggtgtgaaccttgaatac
aaaggaccgaagcctgtatcagccagtgacgtcgactcgtattttgcaggcaagaccata
gtcctcacagggaaaatcgaacgattgagccgaaatgaagcaaaagaaaaaatcgagatg
ctcggcggaaaagtgaccggcagtgtcagtaagaaaaccgatcttgtcattgcaggggaa
gaagcgggatcgaagcttacgaaagcgaatgacttaaatatagaagtctgggatgaggat
aagctgatggaagaacttaaccgataa
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integrated database retrieval system
