Roseovarius faecimaris: EI983_07705
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Entry
EI983_07705 CDS
T06338
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rom
Roseovarius faecimaris
Pathway
rom03030
DNA replication
rom03410
Base excision repair
rom03420
Nucleotide excision repair
rom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EI983_07705 (ligA)
03410 Base excision repair
EI983_07705 (ligA)
03420 Nucleotide excision repair
EI983_07705 (ligA)
03430 Mismatch repair
EI983_07705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rom03032
]
EI983_07705 (ligA)
03400 DNA repair and recombination proteins [BR:
rom03400
]
EI983_07705 (ligA)
Enzymes [BR:
rom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EI983_07705 (ligA)
DNA replication proteins [BR:
rom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EI983_07705 (ligA)
DNA repair and recombination proteins [BR:
rom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EI983_07705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EI983_07705 (ligA)
MMR (mismatch excision repair)
DNA ligase
EI983_07705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EI983_07705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QGX98168
UniProt:
A0A6I6IZX6
LinkDB
All DBs
Position
1497812..1500079
Genome browser
AA seq
755 aa
AA seq
DB search
MPVSESDFSKLDVAALTEAQAEAELARLAQVLEAANTAYHRDDAPDISDAEYDALKARNL
AIEARFPALKRADSPSEQVGGAVAEGFSKVAHAVRMLSLANAFDDADITEFDERIRRYLG
LAPDAPLAYTSEPKIDGLSLSLRYENGQLVQAATRGDGSVGENVTANARTIDDIPQRLTG
APDILEVRGEVYMSHPDFEALNARQAERADKQFANPRNAAAGSLRQLDASITKARPLRFF
AYAWGETSEALSDTQMGAIERLAALGFQTNPLTALCDGPDDLLKQYLRIEQARATLGYDI
DGVVYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLDAIDIQVGRTGALSPVARLS
PVTVGGVVVSNATLHNEDYIAGRGNDGEVIRDGKDLRVGDWVQVYRAGDVIPKVADVDLS
KRPADAVPYTFPETCPDCGSDAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEG
LGAKQVEMFYHDDQLPVHEPAEIFTLKQRDAKNLTRLANRDGWGETSAGNLFQAIDDKRR
IPLKRFLFSLGIRHVGEVAAADLARHFGRYETLSATLDAAAPAADRHLQADAAEAEERRS
AMAEGRRARIKPARDAVWEGLDPAAKSAWEELIGIDGIGATVAVALVTSFQQEAERASIN
RLIAELEIEPDDTPAAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSAKTD
LLVAGPGAGSKAKKAADLGVETIDEDAWLALIGDA
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgtcggagagcgatttcagcaaactggatgtggcggctctgaccgaggcgcag
gccgaggcggaactggcgcggcttgcgcaggttctggaggcggccaataccgcctatcac
cgcgacgacgcgcccgacatatccgatgccgagtatgatgccctcaaggcccggaacctg
gccatcgaggcccggtttcccgcgctcaaacgggccgacagcccaagcgaacaggtgggc
ggggcggtggccgaagggttttccaaagtggcccatgcggtgcgcatgctgtcgctggcc
aacgcgtttgacgacgccgatatcaccgagttcgacgagcggattcgccgctatctcggc
ctcgccccggacgcgccgctggcctatacatcggagcccaagatcgacgggctgagcctg
agcctgcgctacgagaacggtcagctcgtgcaggccgccacgcgcggcgacggctcggtg
ggcgaaaacgtgaccgccaatgcgcgcaccatcgacgatattccgcagcgcctgaccggc
gcgcccgatattctggaggtgcgcggcgaggtctatatgagccacccggatttcgaggcg
ctcaatgcgcggcaggccgaaagggctgacaagcaattcgccaacccgcgcaatgccgcg
gcagggtcgctgcgccagcttgatgcttcgatcacgaaggcgcgtccgctccggtttttc
gcctatgcctggggcgaaacctccgaagcgttgtccgacacccagatgggcgcgatcgaa
cggcttgccgcgctgggctttcagaccaatccgctgaccgccctttgcgacgggccggac
gaccttttaaaacaatacctgcgtatcgagcaggcgcgggccacgctgggctatgacatc
gatggcgtggtctacaaggtcaatgacctggcgctgcaggcgcggctcgggttccggtcg
accacgccgcgctgggcgattgcgcataaattcccggccgagcttgcctggacccggctc
gatgcgatcgacattcaggtgggccgcaccggcgcgctcagccccgtggcgcggctcagc
ccggtcacggtgggcggcgtggtcgtctccaacgcgacgctgcacaatgaggattacatc
gccgggcggggcaatgacggcgaggtgatccgcgacggcaaggacctgcgcgtgggcgat
tgggtgcaggtctaccgcgcgggggatgtgatcccgaaagtggcggatgtggacctgagc
aaacggcccgccgatgccgtaccctataccttccccgagacctgccccgattgcggctcg
gacgccatccgcgaggaaggtgacgccgtgcgccgctgcaccggcgggctgatctgcccg
gcgcaggcggtggaaaagctcaagcatttcgtgtcgcgcgcggcgtttgacatcgagggg
ctgggggccaaacaggtcgagatgttctatcatgatgaccagttgccggtgcatgaacct
gcggagattttcacgctgaagcagcgcgatgccaaaaatctcaccaggctggccaatcgc
gatggctggggcgagacctcggcgggcaatctgtttcaggcgatcgatgacaagcgccgg
atcccgctgaagcggttcctcttttcgctggggatccgccatgtgggtgaggtggccgcc
gccgatctggcgcggcatttcggccgctatgagaccctgagcgccacgctggacgccgca
gcccctgccgccgaccggcatttgcaggccgatgcggccgaggctgaagagcgccgaagc
gccatggccgagggccgccgtgcccggatcaaaccggcacgcgatgcggtctgggagggg
ctggatccggccgcgaagtcggcctgggaggagctgatcggtattgacgggatcggcgcg
accgtggcggtggcactggtcacgagctttcagcaggaggccgagcgtgcctcgatcaac
cggctgattgccgagctggagatcgagcccgacgacacgcctgccgccgccgatagcccc
gtggcaggcaagacggtggtctttaccggcacgctggagaagatgacccgcgccgaggcc
aaggcgcgggccgaggcactgggggccaaggtgtcgggcagtgtgtcggccaagaccgac
cttctggtcgccgggccaggagcgggctcgaaggccaagaaggccgccgacctgggggtc
gagaccatcgacgaggatgcctggcttgccctgatcggtgacgcatga
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