Rhodococcus opacus B4: ROP_65220
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Entry
ROP_65220 CDS
T00882
Symbol
ligA
Name
(GenBank) NAD(+)-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03030
DNA replication
rop03410
Base excision repair
rop03420
Nucleotide excision repair
rop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROP_65220 (ligA)
03410 Base excision repair
ROP_65220 (ligA)
03420 Nucleotide excision repair
ROP_65220 (ligA)
03430 Mismatch repair
ROP_65220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rop03032
]
ROP_65220 (ligA)
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_65220 (ligA)
Enzymes [BR:
rop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ROP_65220 (ligA)
DNA replication proteins [BR:
rop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ROP_65220 (ligA)
DNA repair and recombination proteins [BR:
rop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ROP_65220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROP_65220 (ligA)
MMR (mismatch excision repair)
DNA ligase
ROP_65220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ROP_65220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
BAH54769
UniProt:
C1B1S4
LinkDB
All DBs
Position
7134424..7136517
Genome browser
AA seq
697 aa
AA seq
DB search
MVSESTEAPTPAPGSVREHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLENQ
YPDLRTPDSPTQLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRVEQETGPDLHY
LCEVKIDGVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDKYPIPAL
LEVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGL
GRSEGFEPASQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDVEHEIDGLV
VKVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTV
AGSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPANC
PECDTPLAPAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAATSLLEAKA
IGDEGDLFSLTEDDLLKTTLFRTKAGGLSANGRRLLDNLDSAKDKPLWRVLVALSIRHVG
PTAARALAGEFGSLDRIRESSVEELAAVDGVGGTIAAAVAEWFGVDWHRQIVDKWSAAGV
RMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAILVRGGKAAGSVSKKTAFVVAGES
PGSKHDKAVELGVPVLDEDGFRRLLEGGPDAVTDSGV
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgaatcgaccgaagccccgacaccggcccccggatccgtccgggagcactgg
aacgagctggccgaggacgtgcggcagcaccagttccgctactacgtccgcgacgcgccc
atcatctccgacggagagttcgacgcgctgctgggcgagctgaacgacctcgagaaccag
taccccgacctgcggacgcccgattcgccgacccagctcgtcggcggcggattcgccacc
gacttcgcctccgccgatcacctcgagcggatgctgagcctcgacaacgtcttcgcgacc
gacgaactgcgcacctggatcagccgggtggagcaggagaccggccccgacctgcactac
ctgtgcgaggtgaagatcgacggggtcgcgctgaacctggtgtacgagaacggcagactc
gtccgcgccgccacccggggcgacggccggaccggcgaggaagtgacgctcaacgcccgg
accatcgacgacatcccggaaaagctcaccggcacagacaaatacccgattccggcgctc
ctcgaggtgcgcggcgaggtgttcttccggctcgaggacttcgcggcgctcaacgcggcg
ctcgtcgaggagggcaaggcgccgttcgcgaatccccggaactcggcggccgggtcgctg
cggcagaagaatccggccgtcacggcccgcaggcggctcgggatgatctgccacggcctg
ggccggagcgaaggattcgagccggcctcccagtacgacgcgtacacggcgctggcggcg
tggggcctgccggtgtccacccacaccgtccgcgtgacgggcgcggacgctgtcgtggac
agggtgcagtactggggcgagcaccggcacgacgtggagcacgagatcgacggcctggtg
gtcaaggtcgacgagacgtcgctgcaacgccggctgggttccacgtcgcgggcgccgcgc
tgggcgatcgcgtacaagtacccgccggaggaggccaccaccaaactcctcgacatccgg
gtcaacgtcggccgcaccggccgggtcaccccgttcgcctacatggagccggtcacggtc
gccggatccaccgtctccctcgccaccctgcacaacggctccgaggtcaagcgcaagggc
gtgctgatcggcgacacggtggtgctacgcaaggccggtgacgtgattcccgaggtactc
gggcccgtggtcgacgcccggaccggcgacgaatacgagttcgtgatgccggcgaactgc
ccggagtgcgacacgccgctcgctcccgccaaggagggtgacgcggacattcgctgcccc
aaccagcagtactgccccgcgcagctccgggaacgcgtgttccacgtcgcgggccgcggt
gcgttcgacatcgaggtgctcggctacgaggccgcgacgagcctgctcgaggcgaaggcg
atcggcgacgagggcgacctgttctcactcaccgaggacgacctgctgaagacgacgctc
ttccgaaccaaggccggcgggctgtcggccaacggccgcaggctgctcgacaacctcgat
tccgccaaggacaagcccttgtggcgggtgctggtcgccctgtcgatccgccacgtcggt
ccgacggcggcgcgtgcgctggccggtgagttcgggtcgctcgaccggatccgggagagc
tccgtcgaggaactcgcggcggtcgacggggtcggtggcaccatcgccgccgccgtcgcc
gagtggttcggcgtcgactggcaccggcagatcgtcgacaagtggtcggcggccggggtg
cgcatggaagacgaacgcgacgaatcgattccgcgcaacctcgagggcctgtcgatcgtc
gtcacgggttcgctcgagacgttctcccgcgaccaggcgaaggaggcgatcctcgtccgg
ggcggcaaggccgcgggttcggtgtcgaagaagacggcgttcgtggtggccggcgaatcc
ccggggtcgaagcacgacaaggccgtcgaactcggtgtgccggtcctcgacgaggacggg
ttccgccgactgctcgagggcggaccggacgcggtcacggattccggagtgtga
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