Raoultella ornithinolytica B6: RORB6_00700
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Entry
RORB6_00700 CDS
T02625
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03030
DNA replication
ror03410
Base excision repair
ror03420
Nucleotide excision repair
ror03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RORB6_00700 (ligA)
03410 Base excision repair
RORB6_00700 (ligA)
03420 Nucleotide excision repair
RORB6_00700 (ligA)
03430 Mismatch repair
RORB6_00700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ror03032
]
RORB6_00700 (ligA)
03400 DNA repair and recombination proteins [BR:
ror03400
]
RORB6_00700 (ligA)
Enzymes [BR:
ror01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RORB6_00700 (ligA)
DNA replication proteins [BR:
ror03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RORB6_00700 (ligA)
DNA repair and recombination proteins [BR:
ror03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RORB6_00700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RORB6_00700 (ligA)
MMR (mismatch excision repair)
DNA ligase
RORB6_00700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RORB6_00700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF2229
Prok-E2_C
Motif
Other DBs
NCBI-ProteinID:
AGJ84841
LinkDB
All DBs
Position
158978..160993
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPDLITPDSPTQ
RVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDDLIYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITANVRTIRAIPLRLRGDNIPQRLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGALTGGELPESHS
GRLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPNLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSDRPEETREIVFPTHCPVCNSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKSKATTFARFLYALGIREVGEATAAGLAAYFATIEALEQ
ATIEELQKVPDVGIVVATHVFHFFAEENNRDVIAQLRAEGVNWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLMALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgatcgaacaaaaactaactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccatgttatggataccccggagattcccgatgcggaatatgaccggttaatgcgc
gaactgcgcgagctcgaagctcagcatccggatctgattacccctgattctccaacccaa
cgcgtgggcgcggcgccgctggcgtcattcagccaggtccgccatgaggttccgatgctg
tcgctggataacgtctttgatgaagagagcttccttgccttcaacaagcgcgttcaggat
cgactcaagagcagtgatgacctgatctattgctgtgagctaaagctggacgggctggcg
gtcagcattttgtatgaaaacggcgtcctggttcaggcggcaacccgtggcgatggcacc
accggtgaagatatcaccgccaacgtcaggacaattcgcgccatcccgttgagactgcgt
ggcgacaatattccacaacggctggaagttcgcggcgaggtcttcttaccgcaggccggc
ttcgaaaaaattaatgaagaggcccgccgtaccggagggaaagtgtttgctaacccacga
aacgcggcggcaggttctctgcgtcagctcgatccgcgaattacggcgaagcgaccgctt
actttcttttgttacggcgtgggcgcgctgactggcggtgagctgccggagagccattcc
ggccgtctgcagcagtttaaggcatgggggctgccggttagcgaccgggtaacgctctgc
cataccccagaggaagtgcttacttactaccgtaaagttgaagaagaccgtccgaattta
ggttttgatattgatggtgtggtcatcaaagtcgattctctggcgcttcaggaacagctt
ggatttgtggcccgtgcgccgcgctgggcggtggcgtttaagttcccggcgcaggagcaa
atgacttttgtgcgcgacgtcgagtttcaggtagggcgtaccggagccatcacgccggtg
gctcgcctggagccggtgcatgtggccggtgttctggtgagcaatgctactttgcacaac
gccgatgaaatagagcgcctggggctgcgaattggcgataaagtggtgattcgccgcgcg
ggggacgtgattcctcaggtcgtcaacgtcgtactctccgatcgcccggaggagacgcga
gagatcgtcttcccgacccattgtccggtgtgtaattctgatgttgaacgggtcgaaggc
gaggcggtaacgcgctgtaccggcgggttaatttgcggtgcgcagcgtaaggaagcgcta
aaacattttgtctcccgccgcgcgttagatgtggagggcatgggggataaaattatcgac
cagctggttgagaaagagtacgtccacactccggcagatctcttccgcttaaccgccggg
aaactcaccggtctggatcgaatggggcctaaatcagcacaaaacgtggttaatgccctg
gaaaaatcaaaagcaaccacctttgctcgtttcctctacgcattaggtattcgcgaggtc
ggtgaagcaacggcagcggggctggcggcctatttcgccacgattgaagcgctggagcag
gctactattgaggagctgcaaaaagtgccggatgtgggaattgtcgtggccacgcacgtc
tttcacttctttgctgaagagaacaaccgcgatgtgatcgcgcagctccgcgcggaaggg
gtcaactggcctgcgccggtggtggtcaatgccgaggaaattgatagcccgtttgccggt
aaaacggttgtcctgaccggcagtctcagccagctttctcgcgatgatgcgaaggcgcgg
ctgatggcgctgggggcaaaagtcgccggcagcgtctcgaagaaaacggatctggtgatt
gccggcgaagcggcgggctctaaacttgctaaagcgcaggagctgggcatcgccgtcatt
gatgaagcagaaatgctgcggctgctgggagaataa
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