Raoultella ornithinolytica B6: RORB6_19315 Help Entry RORB6_19315       CDS       T02625                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism ror  Raoultella ornithinolytica B6 Pathway ror03030   DNA replication ror03410   Base excision repair ror03420   Nucleotide excision repair ror03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ror00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     RORB6_19315 (ligB)    03410 Base excision repair     RORB6_19315 (ligB)    03420 Nucleotide excision repair     RORB6_19315 (ligB)    03430 Mismatch repair     RORB6_19315 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ror03032]     RORB6_19315 (ligB)    03400 DNA repair and recombination proteins [BR:ror03400]     RORB6_19315 (ligB) Enzymes [BR:ror01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      RORB6_19315 (ligB) DNA replication proteins [BR:ror03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      RORB6_19315 (ligB) DNA repair and recombination proteins [BR:ror03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      RORB6_19315 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      RORB6_19315 (ligB)    MMR (mismatch excision repair)     DNA ligase      RORB6_19315 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       RORB6_19315 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH DUF3701 Nlig-Ia RNA_ligase Motif Other DBs NCBI-ProteinID:  AGJ88543 LinkDB All DBs Position 4266076..4267755 Genome browser AA seq 559 aa AA seqDB search MHKWIWMIGAWAVAGYGQATCPEWPQAQARQEVHRLNQQVTAWNNAYWRQGSSGVSDEVY DQLSARLMQWRRCFSLLSPADNDDVPPATGEVRHPVAHTGVRKLADKSDIARWMRDKTDL WVQPKVDGVAVTLVYRHGRLAQAISRGDGRAGEDWTARVRLIPAVPKMTEGELANSVLQG EIFLQRDGHVQKQMGGMNARAKVAGTLMRLDTPAQLAELGIFIWAWPDGPQDMRQRLALL RKSGFLHSASFTQPVTDARQVARWRERWLTSPLPFTTDGVVVRRGHEPGGRLWSPGQGEW VVAWKYPPASRLMEVRGIRFRVGRSGKISVVALLEPQRLDDKRVKQVSIGSLSRWKRLDI GLGDQLQISLAGQGIPRLDSVVWRSAQRTKPQPPPERFTPLTCYFTTPGCDAQFLSRLIW LSSKPVLNLDGVGESVWRTVQHARPLAHLFSWLALTPAQLQGIPGITSGRGQRLWHQFNL AREQPFLRWVQAIGVPIPRAALAGLARENWQQLRERSEEQWQRLPGMGVGRARQLVAFLQ HPDVAALAQWLSGQHIPGF NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt atgcataaatggatctggatgattggcgcgtgggcggtggctggatacggacaggctacc tgtcctgaatggccgcaggcacaggcccggcaggaggtacatcgtctcaatcaacaggtg acggcctggaacaatgcgtactggcgacagggaagcagtggggtcagtgatgaagtatac gaccagctttcggcgcgacttatgcagtggcggcgctgtttttcgctgctatcgcctgcg gataacgatgatgtgccgcccgctaccggagaggtcaggcatccggttgcccataccggc gtgcgtaaactggccgataaatcggatattgcgcggtggatgcgcgataaaacggatctc tgggtgcagccgaaagtggacggtgtcgccgtgacgctggtgtatcgccacgggcggctg gcacaggccattagccgtggcgatggtcgagccggggaggattggaccgccagggtgagg ctgattccggccgtgccgaagatgacggagggcgagctggcgaacagcgtgctgcaggga gagatttttctgcagcgcgacgggcatgtgcagaagcaaatggggggaatgaatgcccgg gcgaaagtggccggtactctgatgcgcctcgataccccggcgcagcttgcggaactgggg atctttatctgggcatggccagatggccctcaggacatgcgccagcgtctggctctgttg cgcaagagtggatttctccacagcgcctcttttacgcagcccgttacggatgcgcggcag gtggcacggtggcgagagcgctggttaacctcgcctctgccttttactaccgacggcgtg gtcgtgcgccgcggccacgaacccggcgggcgattgtggtcgccaggacagggtgagtgg gtcgttgcgtggaaatatccgccggcatcgcggttaatggaagtgcgcggcattcgcttt cgggtcgggcgcagcggcaaaatttccgtcgtcgctctgctggagccgcagcgccttgac gacaaacgggttaagcaagtcagtattggctcgctttctcgctggaagcgcctggatatt ggcctcggcgatcagctgcaaatcagtctggcgggccagggcattccgcgcctcgacagc gtagtatggcgatcggcgcagcgtacgaaaccgcagcctcccccggaacggtttaccccg ttgacctgctatttcaccacgccggggtgtgatgcgcagtttctctcaaggcttatctgg ttatcgtcaaaaccggttctgaatcttgatggcgtgggtgaatcagtatggcgcacggtg caacatgcgcgcccgctggcgcatctgttctcgtggctggcattgacgccagcgcagctg caggggattccggggataacctccgggcgcgggcagcggctttggcaccagtttaacctg gcgcgcgagcagccctttctgcgctgggtccaggcgattggcgtaccgattccccgggcg gcgcttgccggtctggcgagggaaaactggcagcagctacgagaacgttctgaagaacag tggcagcgtctgccgggcatgggggtagggagagcgaggcagctggttgcctttctccag cacccggatgttgccgcgctggcgcagtggctcagcgggcaacatatacccgggttttga

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