Rossellomorea sp. y25: V2W31_01815
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Entry
V2W31_01815 CDS
T10157
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ross Rossellomorea sp. y25
Pathway
ross03030
DNA replication
ross03410
Base excision repair
ross03420
Nucleotide excision repair
ross03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ross00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V2W31_01815 (ligA)
03410 Base excision repair
V2W31_01815 (ligA)
03420 Nucleotide excision repair
V2W31_01815 (ligA)
03430 Mismatch repair
V2W31_01815 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ross03032
]
V2W31_01815 (ligA)
03400 DNA repair and recombination proteins [BR:
ross03400
]
V2W31_01815 (ligA)
Enzymes [BR:
ross01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V2W31_01815 (ligA)
DNA replication proteins [BR:
ross03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V2W31_01815 (ligA)
DNA repair and recombination proteins [BR:
ross03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V2W31_01815 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V2W31_01815 (ligA)
MMR (mismatch excision repair)
DNA ligase
V2W31_01815 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V2W31_01815 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_3
RNA_pol_A_CTD
5_3_exonuc
DnaG_cat_HB
Motif
Other DBs
NCBI-ProteinID:
WWO82056
LinkDB
All DBs
Position
334992..336998
Genome browser
AA seq
668 aa
AA seq
DB search
MDRQSAENRLNELHELLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTSDSP
SQRVGGAILDAFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQAVGEDFSYVCELKIDGLA
VSLRYEDGVFIQGATRGDGSIGEDITSNLKTIRSIPLKISEKISFEVRGEAFMPKRSFEA
LNKIKDEKGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADIGDTGIHSHSEGLD
KLEGLGFKTNPERKQCATIEEVIEFVGKWTDQRPNLSYDIDGIVIKVNSLEHQKQLGTTA
KSPRWAIAFKFPAEEVVTVLKEIELSVGRTGVVTPTAILEPVRVAGTTVQRASLHNEDLI
REKDIKIGDHVVIKKAGDIIPEVVNVLEEKRTGDEQEFHMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFREKLIEDVADLYRLEREQLLQL
ERMGEKSADNLLDAIQASKANSLEKLLFGLGIRHVGAKAAKTLAQEFGSMDKLMTLGKEE
LTNVNEIGDKMADAIVAYFENDEAKELIQELKDAGVNLEYKGPKPVAASEVDSYFAGKTI
VLTGKIERLSRNEAKEKIEMLGGKVTGSVSKKTDLVIAGEEAGSKLTKANELNIEVWDED
KLMEELNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgacaatcagccgaaaaccgtttaaatgaattacatgaactgttaaatcaatac
aattatgagtaccatgtgctcgacaaaccttctgtgccagattctgaatatgatcaacta
ctgagggaacttatcgaactcgaagatcaattccctgatctgaaaacatccgattcacct
tctcaacgcgttggaggagcgatactggatgcctttgaaaaagtggaacaccgtacgccc
atgctcagcttagggaatgccttcaatgaagaggatcttcgtgactttgatcgtcgtgtc
cgtcaagcagtcggggaggacttctcctatgtttgtgagctcaagatcgatgggttggca
gtgtcccttcgttacgaggatggtgtgtttatccaaggagcaacaaggggagatggctca
ataggtgaagatattacatcgaatctgaagacaatccgttccattccattgaagatttct
gaaaagatttcctttgaagttcgcggtgaagcatttatgccaaaaagatccttcgaggcg
ttaaataaaatcaaagacgaaaaaggagaagagccttttgccaacccccgcaatgcagcg
gcaggttcacttcgtcaattggaccctaaaattgcagcttcacgaaatctcgatatcttc
ttatatgcgttagcggatattggggatacgggaattcattcgcatagtgaaggattagat
aaattagaaggtttgggatttaaaacaaatcctgaacgaaaacaatgtgccacgattgaa
gaagtgattgaatttgttggaaagtggaccgatcaacgtcctaatctttcctatgatatt
gacgggattgtgattaaggtcaattccttagagcatcagaagcagctcggaacgacagca
aaaagtccacgatgggcgattgccttcaagttccctgctgaagaagtggtaaccgtgtta
aaagagattgaattaagcgtaggccgtaccggggtggtgacacctacagcgattttggaa
ccggtccgtgttgcgggtacaacggttcaacgtgcgtctcttcataatgaagatcttatt
cgagaaaaagatatcaaaatcggtgatcatgtcgtgattaaaaaagccggggatatcatc
cctgaagtggtcaacgtattagaagaaaagagaactggtgatgaacaggaattccatatg
cctactcattgtcctgaatgcgaaagtgagctggtcagactggaaggggaagtcgccctt
cgctgcatcaatcccaaatgtcctgctcagattcgggaaggtctgattcactttgtgtcc
cgaaacgccatgaacatcgatggtcttggagaaaaagtgatcagccagttattcagggag
aaattgattgaagatgtggcagatctataccgtttagagcgggagcagcttcttcaactg
gagcgcatgggtgaaaaatccgcagataacctattggatgccattcaagcatcaaaagcc
aattccctggaaaaattgctctttggacttggaatccgtcatgttggagcaaaagcggcg
aaaacattggctcaagagttcggatcaatggataagttaatgaccttgggcaaagaagag
ctgaccaatgtaaacgaaatcggtgataaaatggcagatgccattgtggcctactttgaa
aatgatgaagcgaaagaactgatccaggaattgaaggatgccggtgtcaatcttgaatac
aaaggaccaaagccggtagctgcaagtgaagtcgactcttattttgcaggaaaaaccatt
gtgttaaccggaaagattgaacgattaagcagaaatgaagcaaaagaaaagatcgaaatg
ctcggtggaaaagtcactggcagtgtcagtaagaaaaccgatcttgtcatcgcaggggaa
gaagcaggatcaaagcttacgaaagccaatgaactgaacattgaagtatgggatgaggac
aagctgatggaagaacttaaccgataa
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