Roseivivax sp. THAF197b: FIV09_05395
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Entry
FIV09_05395 CDS
T06253
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rot
Roseivivax sp. THAF197b
Pathway
rot03030
DNA replication
rot03410
Base excision repair
rot03420
Nucleotide excision repair
rot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIV09_05395 (ligA)
03410 Base excision repair
FIV09_05395 (ligA)
03420 Nucleotide excision repair
FIV09_05395 (ligA)
03430 Mismatch repair
FIV09_05395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rot03032
]
FIV09_05395 (ligA)
03400 DNA repair and recombination proteins [BR:
rot03400
]
FIV09_05395 (ligA)
Enzymes [BR:
rot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIV09_05395 (ligA)
DNA replication proteins [BR:
rot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIV09_05395 (ligA)
DNA repair and recombination proteins [BR:
rot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIV09_05395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIV09_05395 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIV09_05395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIV09_05395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
GT4-conflict
Motif
Other DBs
NCBI-ProteinID:
QFS82256
UniProt:
A0A5P8YZR7
LinkDB
All DBs
Position
1055062..1057197
Genome browser
AA seq
711 aa
AA seq
DB search
MAGKTDNGEIAVDALSEEAAAQELARLAQRLATANDEYYLRDAPTLSDAEYDRLKRRNAA
IEARFPKLKRLDSPSEQIGAAPSDGFDKVQHRVRMLSLSNAFEDDDITEFDTRIRRYLGL
GADEHLNYTAEPKIDGLSLSLRYENGQLVEAATRGDGAEGENVTANARTIDDIPKKLEGA
PDVLEVRGEVYMSHADFADLNTRQAEKGAKTFANPRNAAAGSLRQLDPSVTRDRPLKFFA
YAWGEISAPLAETQKTAIDRLAELGFQTNPLTRLCDGPVEMLDQYRIIEEARATLGYDID
GVVYKVDDLALQSRLGFRSTTPRWAIAHKFPAELAWTWLDAIDIQVGRTGALSPVARLTP
VTVGGVVVSNATLHNEDYIAGRDANGAPIRDGKDIRVGDWVQVYRAGDVIPKIADVDLSK
RPEDAEPFVFPEICPRCQSDAIREEGDAVRRCSGGLICPAQAVERLKHFVGRAAFDIEGL
GAKQVEQFYDDGWIREPADIFALRDKYSSGLQQLKNREGWGEKSAENLFAAIETRRTIPL
GRLIFGLGIRHVGEVASKLLARHYGTWSAFEAAMQEAASCEGPAWDDLIGIDGVGQTLAK
SLVTTMNQEAERASIDRLVAYLDVEEAVRPQTADSPVAGKTVVFTGSLEKMTRAEAKARA
EALGAKVSGSVSAKTDFVVAGPGAGSKEKKARELGIELLDEDGWLTLIGAA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaaaacggacaacggagagatcgcggttgacgcgctgagcgaagaggcggct
gcgcaggaactggcacggctcgcgcaacgcctggcgacggcgaatgacgagtattacctg
cgcgatgcccccacgctgagtgacgcggagtatgaccgtctcaagcgtcgcaacgccgcg
atcgaagcgcgattcccgaaattaaaacgcctcgactccccgtccgagcagattggagcc
gcgccctcggacgggttcgacaaagtgcagcacagggtgcggatgctctcgctgtccaat
gcgttcgaggatgatgacatcaccgagttcgatacgcggattcgtcggtatctgggcctt
ggtgcggacgagcacctcaactataccgcagaacccaagatcgacgggttatccctcagc
ctgcgctatgaaaatggccagctggtggaggccgccacccgcggggatggcgcggagggc
gagaatgtcactgccaatgcccggaccatcgacgacatcccgaaaaagcttgagggcgcg
cccgacgtgctggaggtgcgcggcgaggtctatatgagccacgccgatttcgctgatctg
aacacgcgccaggccgaaaaaggggctaagaccttcgccaatccgcgcaatgcggccgcc
ggatcgctgcgccagctcgacccctccgtcacccgtgatcggccgctgaaattcttcgcc
tatgcctggggagagatttctgcgccgctggcggagacgcagaaaaccgccatcgaccgg
ctggcagaactgggctttcagaccaatcccctgacccggctctgtgacggtccggtcgag
atgctcgaccaataccgcattatcgaggaggcgcgcgcgacgctcggctatgacatcgac
ggcgtcgtctacaaggtcgacgatctggcacttcaatcgcggctcgggttccgctccacc
actccgcgctgggccatcgcgcataaattccctgccgagcttgcctggacatggctcgat
gcgatcgacatccaggtgggtcgcaccggcgcgctgtcgcccgtcgcccggctgacaccg
gtcaccgtgggcggcgtcgtggtctcgaatgccacgctgcacaatgaagattacatcgcc
gggcgggatgccaatggcgcgccgatccgcgacggcaaggatatccgcgtgggcgactgg
gtgcaggtctatcgtgcaggcgacgtgatccccaagatcgccgatgtcgacctgtcgaag
cgcccggaggatgccgagcctttcgtcttcccggaaatctgcccgcgatgccaatcggat
gcgatccgcgaggaaggcgacgccgtgcgccggtgctccggcggtctgatctgccccgcg
caggccgtggaacgcctgaagcacttcgtcggacgcgcggcctttgacatcgaaggactg
ggcgccaagcaggtcgagcaattctacgatgacggctggatccgcgaacccgccgatatc
ttcgccctgcgcgacaagtacagctcgggcctccagcagctcaagaaccgcgagggctgg
ggcgaaaaatccgcggagaacctctttgccgcaatcgaaacacgccgcacgatcccgctc
ggccggctgatcttcggattgggcatccggcatgtgggcgaggtggcctcgaagcttttg
gcccgccactacggcacctggtcggccttcgaggccgccatgcaggaggccgcaagctgc
gaggggcctgcctgggacgatctgatcggcatagatggcgtcggtcagaccctggccaaa
tcgttggtcacaacgatgaaccaagaggccgaacgcgcctccatcgaccgattggtcgcc
tatctcgacgtcgaggaggcggttcgtccgcagaccgcagacagcccggtcgcgggcaag
accgtcgtgttcaccggcagcctcgagaagatgacccgcgccgaggccaaggcacgcgcg
gaggcgctcggggccaaggtttccggctcggtatcggccaagacggactttgtggtcgcg
gggccgggcgcgggttccaaggagaagaaggcccgcgagcttgggatcgagcttctggac
gaagacggctggttgaccttgatcggcgccgcatga
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