Rahnella sikkimica: BV494_00810
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Entry
BV494_00810 CDS
T05331
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rox
Rahnella sikkimica
Pathway
rox03030
DNA replication
rox03410
Base excision repair
rox03420
Nucleotide excision repair
rox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BV494_00810 (ligA)
03410 Base excision repair
BV494_00810 (ligA)
03420 Nucleotide excision repair
BV494_00810 (ligA)
03430 Mismatch repair
BV494_00810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rox03032
]
BV494_00810 (ligA)
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_00810 (ligA)
Enzymes [BR:
rox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BV494_00810 (ligA)
DNA replication proteins [BR:
rox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BV494_00810 (ligA)
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BV494_00810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BV494_00810 (ligA)
MMR (mismatch excision repair)
DNA ligase
BV494_00810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BV494_00810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AVF33556
UniProt:
A0A2L1UKU5
LinkDB
All DBs
Position
177562..179583
Genome browser
AA seq
673 aa
AA seq
DB search
MATIEEQINHLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELITADSPTQ
RVGAAPLSAFEQVKHRVPMLSLDNVFDEESYLAFYKRVQDRLKTAEPLRFCCELKLDGLA
VSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVFMPQPG
FEAMNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHY
DRLQQLKAWGLPVSDRVRVCTGSEDVLAFYRQVEEDRPSLGFDIDGVVVKIDSLDIQEML
GFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVFPTHCPVCHSDVERVEG
EAVARCTAGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTLARFLYALGIREVGEATAANLAAHYGSVDALKA
ADIESLKTVPDVGDIVAKHVVNFLSEEHNRQVIDELLSPEINVHWPEVQVIVPEEIDSPF
AGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIE
VIDEAEMIRLLGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccactatcgaagaacagatcaatcatttacgcacgcagctgcgccatcacgaatat
cagtatcacgttctggatgccccggaagtgccggatgccgaatatgaccgccttatgcgc
gaactgcgcgagctggaaaccgcgcatcctgagctgattaccgccgattcgccgacgcag
cgcgtgggcgccgcgccgctctccgcctttgagcaggtgaaacaccgcgttccgatgctg
tcgctggacaacgttttcgatgaagaaagctatctggcgttttataagcgcgttcaggac
cggctgaaaaccgctgaaccgctgagattctgctgcgaactgaaactcgacggtctggcg
gtcagtctgctgtatgagaatggtgaactggtgcaggcagcaacgcgcggcgacggcaca
accggcgagaacatcacggccaacgtgcgcactatccgcgccattcccctgcgtctgcat
ggtgacaatattcctgagcggcttgaagtgcgtggcgaagtctttatgccgcagccgggc
tttgaagcgatgaacgaagaagcgcgtcgcaccggcggaaaagtgttcgcgaacccgcgt
aatgcggcggcaggttctttgcgccagctcgatccgcgtatcacggctaaacgcccgctg
accttcttctgctacggcgtggggctgctggaaggcggtgaactgccgcgcagccattat
gatcgtctgcaacagttgaaagcctggggattgccggtcagcgaccgcgtccgtgtgtgt
accggcagcgaagacgtgctggcgttttaccgtcaggtcgaggaagaccgtccgtcgctc
ggttttgatatcgacggcgtggtcgtcaaaattgactctctggatattcaggaaatgctg
ggctttgtggcgcgtgcaccgcgctgggcaacggcgtttaaattcccggcccaggaacag
attacgctggtgaaagacgtcgagtttcaggtcgggcgtaccggcgcgataacgccggtg
gcccgtctggagccggtactggtggcgggcgtgatggtcagcaatgccacgttgcataat
gcggatgaaattgagcgccttggcctgcgcatcggcgataccgtaatcgttcgccgcgcc
ggggatgttatcccgcaggtggtgggcgtcgtgctggatgaacgcccggaagatgcccgt
gaagtggtcttcccgacgcattgcccggtctgtcattcagacgtcgaacgtgtcgaaggc
gaagccgtcgcgcgttgtaccgcaggactgatttgtggcgcgcaacgcaaggaggcgctg
aagcatttcgtttcccgtcgcgcgctggacgttgacggtatgggcgataaaatcatcgat
cagctggtggaaaaagagtacgtcaaaaccccggcggatctgttccgtctgaccgcgggc
aagctgaccgggctggatcgcatggggccgaaatctgcccagaatgtagtgaatgcgctg
gaaaaagccaaagaaaccacgctggcacggttcctgtacgcgctgggcatccgtgaagtg
ggcgaagccaccgcggccaatctggcagcgcattacggttccgtcgacgccctgaaagcc
gccgatattgaatcgctgaaaaccgtgccggacgtcggtgatatcgtggcgaaacacgtc
gtgaatttcctgtccgaagaacataaccggcaggtgattgatgagttgttaagcccggaa
atcaatgttcactggccggaagttcaggtcattgtgccggaagagatcgacagtccgttc
gccggtaaaacggtggtgctgaccggttcgctgtcgattttgtcgcgcgatgaagcgaaa
gatcgtctgaccgcgctgggcgcaaaagtgtccggcagcgtgtcgaaaaaaaccgatctg
gtgatcgccggtgaagcggcgggatcaaagttggcgaaagcgcaggaactgggcatcgaa
gtcatcgacgaagcggagatgatccgcctgctgggcgactaa
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