Rhodopseudomonas palustris CGA009: TX73_018230
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Entry
TX73_018230 CDS
T00153
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpa
Rhodopseudomonas palustris CGA009
Pathway
rpa03030
DNA replication
rpa03410
Base excision repair
rpa03420
Nucleotide excision repair
rpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TX73_018230 (ligA)
03410 Base excision repair
TX73_018230 (ligA)
03420 Nucleotide excision repair
TX73_018230 (ligA)
03430 Mismatch repair
TX73_018230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpa03032
]
TX73_018230 (ligA)
03400 DNA repair and recombination proteins [BR:
rpa03400
]
TX73_018230 (ligA)
Enzymes [BR:
rpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TX73_018230 (ligA)
DNA replication proteins [BR:
rpa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TX73_018230 (ligA)
DNA repair and recombination proteins [BR:
rpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TX73_018230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TX73_018230 (ligA)
MMR (mismatch excision repair)
DNA ligase
TX73_018230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TX73_018230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Ribosomal_L37ae
Motif
Other DBs
NCBI-ProteinID:
WCL93693
LinkDB
All DBs
Position
complement(3974464..3976611)
Genome browser
AA seq
715 aa
AA seq
DB search
MTAKTKPAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAI
EQKFPELVNASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLD
DVPAIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIP
ATCELRGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLRQKDVTVTASRPLKFFAY
AWGEMSDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDI
DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQ
PVTVGGVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVME
KRPAGAEPYHFPHKCPVCGSHAVREEGEAVWRCTGALICPAQAVERLKHFVSRLAFDIDG
LGEKQIELFHERGWVQEPADIFTLKARNAELKLEQLEGYGETSVRNLFAAIDARRSIELH
RLVFALGIRHVGEGNAKLLARHYGTLDAFLSAMRAAADAQTEEGNTSEAYQDLDNIAGIG
DVVAEAVVEFFAEERNIKALDALLAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDE
AKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALIGN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaaaccaaacccgcccccgatatcgccaccctcaccaagcccaaggccaag
gtggagctgatgcgattgcgcctcgagatcgaggggcatgacaaggcgtactatcaggat
gacgcgccgaagatttcggatgccgactacgacgcgttgcggcggcggctggaggcgatc
gagcagaaatttcccgagttggtcaacgcatcgtcgccgacccagaccgtcggcgcggcg
ccggcgcgcggctttgccaaagtgcagcacgcggtgccgatgctgtcgctcggcaacgca
tttgccgatgacgaagtcgctgaattcgccctgcgcgtgcagcgctttctcaagctcgac
gacgtcccggcgatcgttgccgaaccgaagatcgacgggctgtcgctgtcgctgcgctat
gagaacggcgagctggtgcgcgcggcgacgcgtggcgacggatttaccggcgaggatgtc
accgccaacgtccgcaccatcaaggacgtgccgaacacgttgaagggcaagcacatcccg
gccacctgcgagctgcgcggcgaagtctatatgctgaagcaggacttcctcgcgctgaac
aagcgccaggaggaggcgaacgagaccgtattcgccaatccgcgcaattcggcggccggc
tcgctgcggcagaaggatgtcaccgtcaccgcatcgcggccgctgaagttcttcgcttat
gcgtggggcgagatgagcgactatccgatggaagagccgacccagcacaagatgctgcaa
tggctcgatcacgccggcttcgtggtcaatcccgagatcacgctctgccacagcgtcgag
gatgcgctcgcgttctatcgccggatcggcgagaagcgcgcctcgctgccgtacgacatt
gacggcgtggtctataaggtcgaccgcctcgactatcaggagcggctcggcttcgtgtcg
cgctcgccgcgctgggcgatcgcgcataagttcgccgccgagcaggcaacgaccgtgctg
gagaagatcgacatccaggtcgggcgcaccggcgcgatgacgccggtggcgcggctgcag
ccggtgacggtcggcggcgtggtggtgcagaacgcgacgttgcacaatgaggactacatc
aagggcatcggcaatgacggcgagccgatccgcgacggcgtcgacatccgcgaaggcgac
accgtggtggtgcagcgcgctggcgacgtgatcccgcagatcgtcagcgtggtgatggag
aagcggcccgccggtgccgagccctatcacttcccgcacaagtgcccggtgtgcggcagc
cacgcggtgcgcgaagagggcgaggcagtgtggcgctgcaccggcgcgctgatctgcccg
gcgcaggcggttgagcggctcaagcacttcgtgtcccggctggccttcgacatcgacggg
ctcggcgaaaagcagatcgagctgttccacgagcgcggctgggtgcaggagcccgccgat
atcttcacgctgaaggcgcgcaacgccgaactcaagctcgaacagctcgaaggctacggc
gagacctcggtgcgcaatctgttcgcggcgatcgacgcgcggcgctcgatcgagctgcat
cggctggtcttcgcgctcggcatccgccatgtcggcgagggcaatgccaagctgctggcg
cgccactacggcacgctggatgcgttcctcagcgcgatgcgcgccgctgccgacgcgcag
accgaggagggcaacacctccgaggcgtatcaggacctcgacaatatcgccggcatcggc
gacgtcgtggcagaggcggtggtcgagttcttcgccgaggagcgcaacatcaaggcgctc
gatgcgttgctggccgaactcaccgaagtgctgccggccgagcaggcacggcgcgacact
gcggtcgccggcaagaccgtggtgttcaccggctcgctgtcgaaattcacccgcgacgag
gcgaaggccgcggcggaacggctgggcgccaaggtcgccggctcggtgtcgaagaagacc
gactacgtcgtcgccggcgaagatgccggctccaagctgacgaaggccaaggacctcggt
gtcaccgtgctgaccgaggacgagtggctggcgctgatcggaaactga
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