Ruminiclostridium papyrosolvens: P0092_13445
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Entry
P0092_13445 CDS
T08965
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpay
Ruminiclostridium papyrosolvens
Pathway
rpay03030
DNA replication
rpay03410
Base excision repair
rpay03420
Nucleotide excision repair
rpay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P0092_13445 (ligA)
03410 Base excision repair
P0092_13445 (ligA)
03420 Nucleotide excision repair
P0092_13445 (ligA)
03430 Mismatch repair
P0092_13445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpay03032
]
P0092_13445 (ligA)
03400 DNA repair and recombination proteins [BR:
rpay03400
]
P0092_13445 (ligA)
Enzymes [BR:
rpay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P0092_13445 (ligA)
DNA replication proteins [BR:
rpay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P0092_13445 (ligA)
DNA repair and recombination proteins [BR:
rpay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P0092_13445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P0092_13445 (ligA)
MMR (mismatch excision repair)
DNA ligase
P0092_13445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P0092_13445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
BRCT_2
PTCB-BRCT
DNA_ligase_ZBD
HHH
Lar_restr_allev
Nlig-Ia
Peptidase_C14
Motif
Other DBs
NCBI-ProteinID:
WES32760
LinkDB
All DBs
Position
complement(3009952..3011925)
Genome browser
AA seq
657 aa
AA seq
DB search
MADKIQLMKDKIEILNKAAKAYYQENTEIMPNIEYDKLYDELLELEKETGVVLSNSPSIH
VGYELLSNLPKERHEKPMLSLDKTKEVGALKEWIGTQKGILSWKLDGLTIVLTYQDGHLV
KAVTRGTGEVGEVITNNARVFRNLPVTIAYKDTLILRGEAIIRYSDFIKINNEISDVDAK
YKNPRNLCSGSVRQLNNKVTSERNVYFFAFSLVKADNVELENSRASQMNWLKNQGFDIVE
FKEVTSNDIEETVQWFSQNIEANDLPSDGLVLTFDNIAYGESLGSTAKFPRDSIAFKWRD
EIKETTLLEIEWSASRTGLINPIAIFEPVELEGTTVSRASIHNLSIMEGLELGIGDTIGV
YKANMIIPQISENLTRSGMAPIPEECPVCSGKTEIKQENGVKTLYCVNNECLAKQIKSFT
HFVSRDAMNIEGLSEATLEKLIAKGLIKELADLFHIEMYKNEIIEMEGLGEKSFNKLIAS
INKARKTTAIRLLYSLGIPNVGLSNAKLICKYFKYDWNNIENADFTELIQIGGIGDIMAE
SFISFFADEKKRIIVHDVLKELELEEVQVSQSEQIFENVNFVITGSVEMFKNRDELKGVI
EEKGGKVTGSVTSKTNYLINNDNLSNSSKNKKAKELNISIITEAQFVEWINNGVKPE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaaattcaactaatgaaagataagattgagatacttaacaaagcggcgaaa
gcatattatcaggaaaatactgaaattatgcctaatatagaatacgacaagctttatgat
gaattattggaacttgaaaaagaaacaggtgttgttctttccaatagtccgtctattcat
gtaggctatgagcttctgagcaatctgccaaaagaacgtcatgaaaaacctatgctttca
ttggataagaccaaggaggtcggtgcgttaaaggaatggataggtacacaaaagggtatt
ctttcatggaaactagacggtcttactattgtgttgacttatcaggacgggcatttggta
aaggcggttacaagaggcaccggtgaagtgggagaggttattacaaataatgcaagggta
ttcaggaacttgcctgttaccatagcatacaaggacacgttgattttgcgcggtgaagcc
attatccgatattctgattttattaaaataaataatgaaatatcagacgttgatgcaaaa
tataagaatcccagaaacctttgcagcgggtctgtaagacagctgaataacaaggttacc
tcggaaagaaatgtatatttctttgccttttcgttggtaaaagccgataatgttgagctt
gaaaactccagagcttctcaaatgaactggttgaaaaatcagggctttgacattgtggag
tttaaagaggtaacaagtaatgatatagaagaaaccgttcaatggttttcacagaatatt
gaagcaaacgatttgccgtcagacgggttggtgcttacatttgataacattgcctatgga
gaatcgttgggctctacggctaaattccccagagattccattgcttttaagtggagggac
gaaatcaaagaaactacccttcttgaaattgagtggagtgcatcaagaaccgggttgata
aatcctattgcaatttttgagccggttgagctggaaggaaccactgtaagcagagccagt
atacataatctaagtattatggaggggctggagttgggaattggtgataccataggtgta
tataaggcaaatatgattataccccagatttctgaaaatctcaccagaagcggtatggca
ccaatacctgaagagtgtcctgtttgcagcggcaaaactgaaataaagcaggagaatggg
gtaaaaacattatattgtgtcaataatgagtgtcttgcaaagcagattaagtcctttacc
catttcgtaagcagggatgctatgaatatagaaggtttatcagaagccactttggaaaaa
ttaattgcgaaaggcttaataaaagaactggctgacttatttcatatagaaatgtacaaa
aatgaaataattgagatggagggcctgggggaaaaatcctttaataaattgattgcgtca
ataaataaggccagaaaaacaactgctataaggcttctatatagccttggtattcccaat
gtaggtttgtctaatgcgaagctcatatgcaaatattttaaatacgattggaataatatt
gagaatgctgattttaccgaactaattcaaataggcggaatcggtgatattatggcggaa
tccttcatcagcttttttgccgatgaaaagaagaggattatagttcatgatgttttaaag
gagcttgaacttgaggaggttcaggtatctcaatcagaacagatttttgagaatgtaaac
tttgtcattacggggtctgttgagatgtttaaaaacagggatgaattaaagggggttatt
gaggaaaaaggcggaaaagtaaccggctcggttacttcaaaaaccaactatcttataaat
aacgataatttatctaattcgtcaaaaaataaaaaagcaaaagagctaaacataagtatt
ataacagaagcgcagtttgttgaatggataaataacggggtaaagcctgagtaa
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